GBrowse Details

Vigan.09G219700.01

Basic Information:
Name: Vigan.09G219700.01
Multiple alignment
Variant Information
Position: Chr09:36309607..36312996 (+ strand)
Length: 3390
Functional Information:
Description: Similar to Auxin-induced protein 22A. [P32293, Vigna radiata var. radiata]
GO: Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Cellular Component: nucleus (GO:0005634)
Molecular Function: protein dimerization activity (GO:0046983)
InterPro: AUX/IAA protein (IPR003311)
Aux/IAA-ARF-dimerisation (IPR011525)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,3.60,9.73,4.87,1.03,11.05,1.29,40.59
Arabidopsis thaliana homolog: AT3G15540.1
Automatic updates:
Name: BT094830 NCBI(nuccore)
Organism: Glycine max
Description: Soybean clone JCVI-FLGm-14F6 unknown mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001250920 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max auxin-regulated protein (Aux22) (AUX22), mRNA.
PubMed ID: 2899079 NCBI(pubmed)
Status: Known Variant
Name: NM_001376201 NCBI(nuccore)
Organism: Vigna radiata
Description: Vigna radiata auxin-induced protein 22A (AUX22A), mRNA.
PubMed ID: -
Status: Known Variant
Name: PZ171990 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max clone GmIAA9 IAA9 protein (IAA9) mRNA, complete cds.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:36309607..36309764 (+ strand)
Length: 158
Type: five_prime_UTR
Position: Chr09:36309765..36310140 (+ strand)
Length: 376
Type: CDS
Position: Chr09:36311122..36311215 (+ strand)
Length: 94
Type: CDS
Position: Chr09:36312651..36312765 (+ strand)
Length: 115
Type: CDS
Position: Chr09:36312766..36312996 (+ strand)
Length: 231
Type: three_prime_UTR


>Vigan.09G219700.01
TTCACTTTCT ATATATACAC ATTCTAACTA AACCTTTTCT CCCATATTCC AAAAACCATT CACACATACA TAACCCTTCA
CTGTATCAAA TTATACACTA ATATTCTCAT TCCACCCTGA GAGAAACTAA TCATCCTTAT CATACTTTGT ACCCTAATAT
GGCCAAAGAA GGTCTTGGAC TTGAAATCAC CGAGCTGAGA TTGGGTCTAC CCGATGCTGA CCATGTGAGT GTGGCTAACA
AGAACCGTGA AAAGAAGAAT AAGAGGGTGT TCTCGGAGAT TGATGATGTT GGAGATGAAA ACAGCTCCTC CGGCGGCGGT
GGTGACCGGA AAATGGAGAA CAAGAATCAA GTGGTGGGGT GGCCTCCGGT GTGCTCCTAC AGGAAGAAGA ACAGTGTGAA
CGAAGCTTCA AAAATGTACG TTAAGGTTAG CATGGATGGT GCTCCTTTCT TGCGTAAAAT GGATCTGGGT ATGCACAAAG
GATACTCCGA TTTAGCCTTC GCTTTGGAGA AGCTCTTTGG TTGCTATGGA ATAGTGGAAG CATTGAAGAA TGCGGAGAAT
GGTGAACACG TTCCCATTTA CGAGGACAAA GATGGCGACT GGATGCTTGT TGGAGATGTC CCATGGGAAA TGTTCATGGA
GTCTTGCAAG AGGTTGAGGA TTATGAAGAG AGCAGATGCA AAGGGGTTCG GTTTGCAACC AAAAGGATCC TTAAAGGGAT
TCATAGAAAG CGTGGGAAAG TGAAAGACAC GTTAGGGTTC TAATTAATGC ACTTTTGATG ATGATCGATG ATGATGAATC
CAAATTTATG TTATGGTTTT CTTATATTAA TTTGAGAAAG CATATCTTTT TAGTTTGATA TATGAATCAA ACTTTTGTTT
ATGTTAAAGT GTTAATGGAT GACATATAGG ACCCTATATA ATCAATAGGG AAAACTTATC TTTTTTTTAG ATTAATGATT
TCTCTTGTTT CTTC

>Vigan.09G219700.01
ATGGCCAAAG AAGGTCTTGG ACTTGAAATC ACCGAGCTGA GATTGGGTCT ACCCGATGCT GACCATGTGA GTGTGGCTAA
CAAGAACCGT GAAAAGAAGA ATAAGAGGGT GTTCTCGGAG ATTGATGATG TTGGAGATGA AAACAGCTCC TCCGGCGGCG
GTGGTGACCG GAAAATGGAG AACAAGAATC AAGTGGTGGG GTGGCCTCCG GTGTGCTCCT ACAGGAAGAA GAACAGTGTG
AACGAAGCTT CAAAAATGTA CGTTAAGGTT AGCATGGATG GTGCTCCTTT CTTGCGTAAA ATGGATCTGG GTATGCACAA
AGGATACTCC GATTTAGCCT TCGCTTTGGA GAAGCTCTTT GGTTGCTATG GAATAGTGGA AGCATTGAAG AATGCGGAGA
ATGGTGAACA CGTTCCCATT TACGAGGACA AAGATGGCGA CTGGATGCTT GTTGGAGATG TCCCATGGGA AATGTTCATG
GAGTCTTGCA AGAGGTTGAG GATTATGAAG AGAGCAGATG CAAAGGGGTT CGGTTTGCAA CCAAAAGGAT CCTTAAAGGG
ATTCATAGAA AGCGTGGGAA AGTGA

>Vigan.09G219700.01
MAKEGLGLEI TELRLGLPDA DHVSVANKNR EKKNKRVFSE IDDVGDENSS SGGGGDRKME NKNQVVGWPP VCSYRKKNSV
NEASKMYVKV SMDGAPFLRK MDLGMHKGYS DLAFALEKLF GCYGIVEALK NAENGEHVPI YEDKDGDWML VGDVPWEMFM
ESCKRLRIMK RADAKGFGLQ PKGSLKGFIE SVGK*