GBrowse Details

Vigan.09G221500.01

Basic Information:
Name: Vigan.09G221500.01
Multiple alignment
Variant Information
Position: Chr09:36450925..36456054 (+ strand)
Length: 5130
Functional Information:
Description: Similar to cytochrome c oxidase subunit 5b-2, mitochondrial-like. [XP_004486697.1, Cicer arietinum]
GO: Cellular Component: mitochondrial envelope (GO:0005740)
Molecular Function: cytochrome-c oxidase activity (GO:0004129)
InterPro: Cytochrome c oxidase, subunit Vb (IPR002124)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:71.30,80.30,79.98,31.01,149.28,101.68,69.62,37.37
Automatic updates:
Name: NM_001253167 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max cytochrome c oxidase subunit 5b-2, mitochondrial-like (LOC100780886), mRNA; nuclear gene for mitochondrial product.
PubMed ID: 18927222 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr09:36450925..36451134 (+ strand)
Length: 210
Type: five_prime_UTR
Position: Chr09:36451135..36451273 (+ strand)
Length: 139
Type: CDS
Position: Chr09:36451346..36451434 (+ strand)
Length: 89
Type: CDS
Position: Chr09:36451680..36451730 (+ strand)
Length: 51
Type: CDS
Position: Chr09:36452622..36452688 (+ strand)
Length: 67
Type: CDS
Position: Chr09:36452812..36452891 (+ strand)
Length: 80
Type: CDS
Position: Chr09:36455167..36455229 (+ strand)
Length: 63
Type: CDS
Position: Chr09:36455230..36456054 (+ strand)
Length: 825
Type: three_prime_UTR


>Vigan.09G221500.01
CAAAGATTAA AATTTGAAAT AAAATAAATC GAAATATGGA ATAATAAAAT GTAGTAAAAT TGTAATTTTG AGCGGTCGAT
GGGTTAGGAG CAATCGAAAG GTAGCCGAAG AGAAAGAGAA AAGACGATCT AGAGTGAAGG AAGTAGCAGG AGGTAACAAC
TCCATTTCCA ATTTTCTGAC TCGGCTGACG GGTGCGACCT GAGATCAAAC ATGTTGCGGA GGTTTCTCTC TTCCCACCTA
AAAACCCTAG CCGCCGCTTC TTCCTCCTCT CTCACTTCCC GATCTGCTTC CGCCGCCGCC AGATTCCCCG CTCTTTCTCG
CTCCTACCGC TACTTCTCAA CTCAATCCGA GGATGCTACT GCGATCAAAA AGAAGTTTGA GGATGTAATG CCTATTGCTA
CCGGACACGA GCGCGAGGAG CTCGAAGCTG AGCTCGAGGG AAGGGATATT CTTGAAATAG ACCATCCCGA AGGTCCATTC
GGCACAAAGG AAGCACCTGC CATTGTAAAA TCTTACTATG ATAAAAGGAT AGTTGGATGC CCAGGCGGTG AAGGCGAGGA
TGAGCATGAT GTTGTCTGGT TTTGGCTGGA GAAAGGAAAG CCTCATGAAT GTCCTGTGTG CGCACAATAT TTTGTTCTTG
AAGTGGTAGG ACCTGGTGGA CCACCCGATG GACATGGCGA TGATGATCAC CACCATTGAT TGATCATTCA ATTTTCCATC
TGGAATAAAT TCTGGGAACA TGGAGAGACA TTGTTTAGCA TACACTCCGG CCTTTCAAAA TGCTGTGGCC TGTTTGGTTT
TGATTTGTCT GTATGGTATG GCAACTTTTG AGGTAGTAAC TTTCTGCGAT TGTTTGAACG CTGTATGCTC ATTTTTTTGA
GCTATCATGG TGCTAGACTG TTTTTGTTGG TTGCGAAATA ATGGATAGAA CTTGATGATT TCTTAACTGG TTTGAATTTC
CGGAACCACG TAAGGGATTA TGTTTTGGGG AGCAGGGAGA GAATTCCAAG AACGTGACTT CAAATTGTTT AAAAGGTGTG
AGCGTAACGG CGAGGAGGTC CTCTCGCCAC TAAACAACAT TTATGTAGTA ACGGTGGTTG TTTTTAATCA TATTTTCCCC
ATTTTGTTTC AGCCTATTAT TAAGCAGTTC TACTCGTTTA GAACTCTTAA TCATATCTTA AAGAATCATC ATCTTGTGAA
ATGGTTGTTT TTTCCAAGTT CTAACTATTT GGAACGTTCA CATGGCTACA GAATATCTAG CATCAGAAAT AGACGTTGAA
TACGTAGTAT GCAAATATTG TGGATGAAAA CAGCAAATAC AAGTTTGATT ACACCGTCAT CAACCCATGA ATTTATCTCG
CTGAAAGCTA CAACCAATTG GTTTGCCGTT GAATATTACA TTAACAAAAA AAGTTATATG TATATGTATT GTGAATAAAT
CTTTTCAAGA ACTTCATGGA ACAAATGGCA CATGAAGTCC TTAATTCTGT TTTATTTTTT CGGATTACAA ATAAAGTAAC
CCAG

>Vigan.09G221500.01
ATGTTGCGGA GGTTTCTCTC TTCCCACCTA AAAACCCTAG CCGCCGCTTC TTCCTCCTCT CTCACTTCCC GATCTGCTTC
CGCCGCCGCC AGATTCCCCG CTCTTTCTCG CTCCTACCGC TACTTCTCAA CTCAATCCGA GGATGCTACT GCGATCAAAA
AGAAGTTTGA GGATGTAATG CCTATTGCTA CCGGACACGA GCGCGAGGAG CTCGAAGCTG AGCTCGAGGG AAGGGATATT
CTTGAAATAG ACCATCCCGA AGGTCCATTC GGCACAAAGG AAGCACCTGC CATTGTAAAA TCTTACTATG ATAAAAGGAT
AGTTGGATGC CCAGGCGGTG AAGGCGAGGA TGAGCATGAT GTTGTCTGGT TTTGGCTGGA GAAAGGAAAG CCTCATGAAT
GTCCTGTGTG CGCACAATAT TTTGTTCTTG AAGTGGTAGG ACCTGGTGGA CCACCCGATG GACATGGCGA TGATGATCAC
CACCATTGA

>Vigan.09G221500.01
MLRRFLSSHL KTLAAASSSS LTSRSASAAA RFPALSRSYR YFSTQSEDAT AIKKKFEDVM PIATGHEREE LEAELEGRDI
LEIDHPEGPF GTKEAPAIVK SYYDKRIVGC PGGEGEDEHD VVWFWLEKGK PHECPVCAQY FVLEVVGPGG PPDGHGDDDH
HH*