GBrowse Details

Vigan.09G222000.01

Basic Information:
Name: Vigan.09G222000.01
Multiple alignment
Variant Information
Position: Chr09:36480979..36482667 (+ strand)
Length: 1689
Functional Information:
Description: Similar to uncharacterized RNA-binding protein C17H9.04c-like. [XP_004506902.1, Cicer arietinum]
GO: Molecular Function: zinc ion binding (GO:0008270)
InterPro: Zinc finger, RanBP2-type (IPR001876)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.08,1.00,15.60,2.14,4.39,24.72,14.81,23.85
Automatic updates:
Name: NM_001249913 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max zinc finger Ran-binding domain-containing protein (LOC100499847), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001250525 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527535 (LOC100527535), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:36480979..36481560 (+ strand)
Length: 582
Type: five_prime_UTR
Position: Chr09:36481561..36481916 (+ strand)
Length: 356
Type: CDS
Position: Chr09:36482233..36482308 (+ strand)
Length: 76
Type: CDS
Position: Chr09:36482309..36482667 (+ strand)
Length: 359
Type: three_prime_UTR


>Vigan.09G222000.01
CGGCACTCCA TTTATTCTCT TTTTTCTGTG GTCTCTGCCA GTATATAAAC CATCCCCCAT ATCACATTTT CTCATCAGCA
AATCCTCTAC AGCTTCTTCT GCTTCTCTAA CACTCCAACT CACTACACTA TCTTCAGGTT GGTCTTTGTA TTTTCCCTTC
CACTACCCCC CCTCATATTT TTTCTCAATC TTCAAAACTC TCTATGTAGT TCTTCACTAT TTAAACTCTC CAGAAGGTCA
CATTTATAGT AATGTGATCA ATCTGTCTTC TACTAGAATG CTATTTTATG TCACCTCGTA ACTTGTTTTC ATATGTTTCA
GAGAAGTTAA TCCAAGACCG AGTTATTTTA TTTTAGACTT GTCCCAATAT TATAATAAGC ATGATGCTAG CAAGCTAGCT
AGTGCCTAGT ACTATGCACA AGCACATTAC ATAATGTGGC AATAAATATT CAGAGGAAGC TAACAGAAAA ATGTATTCAA
CATTTGAAAC ATGGTTTGAA ACATGGTTCA AAGTGTACAC ACAGAGTCTT CTAACTATGA TTGTGTTTGG TGAATGCAAC
AGTGATTTGC AGGGAAGTAA ATATGAGCAG ACCGGGAGAC TGGAACTGCA GGTCATGCCA GCACCTGAAC TTTCAGAGGA
GAGATTCATG CCAGCGATGT GGGGACTCAA AATATGGAGA TAGAATTGAT TTTGGTGCGT TTGGAGGAAG AGGAGGGTCT
TCGTTTGGGT TAACTGGGTC AGATGTTCGT CCTGGTGACT GGTACTGTGC TGCTGCTAAC TGTGGGGCTC ACAACTTTGC
TAGCCGCTCA AGCTGCTTCA AGTGTGGTGC TTTCAAGGAT GACTTGGCTG GAGGCTACAA CAGTGACATC TTGCGCTCAA
GAGCTTTTGG TGGCAGTGGA AGACCTGGCT GGAAATCTGG TGATTGGATA TGCAGCAGAT CAGGATGCAA TGAGCACAAC
TTCGCTAGCA GAATGGAATG CTTTAAATGC AGTGCTCCAA GGGACACGTA CTAGTAGAAA TGAGTTTATC CAAGCAAGAA
AGCGAGCTAC ATTGATTACT GGAGATGCTG CAAGATTTCT TTATTAATTT CTTTGGGATG TTAAAGACAG TGTGAATTCT
GAAAAGGTGG TTTAAAAAGC CATGTTACAG AGAAGCTAGC TAGCTACATC CCTTAGGATC TTTCTCAGAT TTACCTCAAG
AACTACAGCA ATGTTGTTTT GGTGCTTTAA ACTATTTTCT TTAGTTTTGA AGTTAGAGTT CCATTTATTG TATGGTGCGT
GGTTTTCTTA AATGAATATG AATCTCTTTT CTTTTCCCCT AGTTGTACTT CCTGAAATGG TGATGCAATG ATCCATCACA
TTCATTTGAT TAA

>Vigan.09G222000.01
ATGAGCAGAC CGGGAGACTG GAACTGCAGG TCATGCCAGC ACCTGAACTT TCAGAGGAGA GATTCATGCC AGCGATGTGG
GGACTCAAAA TATGGAGATA GAATTGATTT TGGTGCGTTT GGAGGAAGAG GAGGGTCTTC GTTTGGGTTA ACTGGGTCAG
ATGTTCGTCC TGGTGACTGG TACTGTGCTG CTGCTAACTG TGGGGCTCAC AACTTTGCTA GCCGCTCAAG CTGCTTCAAG
TGTGGTGCTT TCAAGGATGA CTTGGCTGGA GGCTACAACA GTGACATCTT GCGCTCAAGA GCTTTTGGTG GCAGTGGAAG
ACCTGGCTGG AAATCTGGTG ATTGGATATG CAGCAGATCA GGATGCAATG AGCACAACTT CGCTAGCAGA ATGGAATGCT
TTAAATGCAG TGCTCCAAGG GACACGTACT AG

>Vigan.09G222000.01
MSRPGDWNCR SCQHLNFQRR DSCQRCGDSK YGDRIDFGAF GGRGGSSFGL TGSDVRPGDW YCAAANCGAH NFASRSSCFK
CGAFKDDLAG GYNSDILRSR AFGGSGRPGW KSGDWICSRS GCNEHNFASR MECFKCSAPR DTY*