GBrowse Details

Vigan.09G224700.01

Basic Information:
Name: Vigan.09G224700.01
Multiple alignment
Variant Information
Position: Chr09:36631905..36634992 (+ strand)
Length: 3088
Functional Information:
Description: Similar to Post-illumination chlorophyll fluorescence increase isoform 3. [XP_007023203.1, Theobroma cacao]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:180.19,10.51,5.81,438.49,1.95,35.44,2.92,7.94
Arabidopsis thaliana homolog: AT3G15840.1
Automatic updates:
Name: NM_001253964 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100790141 (LOC100790141), mRNA; nuclear gene for chloroplast product.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr09:36631905..36632027 (+ strand)
Length: 123
Type: five_prime_UTR
Position: Chr09:36632028..36632109 (+ strand)
Length: 82
Type: CDS
Position: Chr09:36632576..36632702 (+ strand)
Length: 127
Type: CDS
Position: Chr09:36632921..36633005 (+ strand)
Length: 85
Type: CDS
Position: Chr09:36633090..36633168 (+ strand)
Length: 79
Type: CDS
Position: Chr09:36633402..36633515 (+ strand)
Length: 114
Type: CDS
Position: Chr09:36633599..36633711 (+ strand)
Length: 113
Type: CDS
Position: Chr09:36634458..36634568 (+ strand)
Length: 111
Type: CDS
Position: Chr09:36634671..36634796 (+ strand)
Length: 126
Type: CDS
Position: Chr09:36634797..36634992 (+ strand)
Length: 196
Type: three_prime_UTR


>Vigan.09G224700.01
GCCACTTTCT ACACGCACAC TGGAAAATAT CATTTATCTC TTGCTATCTC TTGGCTATTA TAAATTTGGA CATGTTCTAT
TCTTAGATTT CACTTCTCTT CTTCAATATT CTGTCATACA TAAATGGCTG CAACCAATGC TTCTTTCTTT GCTTCTTCCA
CGCAGCCATG TTTGCCTGTG TCTCCAACCA TTTCAAACAC GCTATCTAGT TCTTTTCTCA ATGTGTCATT ACCAAAAAGT
TACCCTGTGA AGAAAAATCA TATGAAAATT AGCAAAAAGA TCTGTGCTGC TGCTGTTGCA ACACCAACAA CAACTACTGA
GGAAATTAAA GAGTACAAGC TTCCTTCTTG GGCTCAGTTT GAGATTGGAA GAGCTCCTGT GTATTGGAAA ACAATGAATG
GCCTCCCTCC TACCTCAGGA GAAAAGCTAA AGCTTTTGTA TAATCCAGCA GCAGCTCAAC TAGTCCCTAG TGAAGAATTT
GGAATTGCTT TTAATGGAGG TTTTAATCAG CCAATTATGT GCGGTGGTGA GCCAAGGGCT ATGCTTCGAA AAAATAGAGG
CAAAGCTGAT GCTCCAATAT ATACCATTCA GATATGCATT CCAAAGCATG CTCTGAACTT GATCTTCTCA TTTACTAATG
GAGTAGACTG GGATGGTCCA TACAGACTGC AATTTGAAGT TCCTAAGGCT TTAAAGAACA AGCCAATTGA GTTTTTTAAT
AGGGGTTTGG CAGATGAACT GAGTAAAGAA GGAGCATGTG AGCAGGCAAT ATTTCCAGAC ACAAACGTAG TTATATCAAG
ATGTGCTATG ATTGGTAATT TGTCAAAAGA AGGGGGTGAT CGTTGCGATC TGAATCTTGT TTTAGGATGC ACAGATCCTA
GTTCTCACCT GTACAACCCA CTAGCTAATG TAGATGATGG AACATGTCCA ATTGATTTGG ATTCTGAGTC TGAGGATTAG
CATTATACTT TTCATGAATA TTCATTTGGA TCATACTTTG TGTTGGTTTT AAGTACATAG ATAGTGTATA TTGTATATAA
ATTCACTCTT GAAATTGAAC ATTGTCATGT CTGGTTGTGG TCTTGAAAAA ACTATGGTTT TGCTACATTA TTTCTCTCTT
TAATTTGTTA CTGTTAAAAC ATGTTTTCTC TTTCTC

>Vigan.09G224700.01
ATGGCTGCAA CCAATGCTTC TTTCTTTGCT TCTTCCACGC AGCCATGTTT GCCTGTGTCT CCAACCATTT CAAACACGCT
ATCTAGTTCT TTTCTCAATG TGTCATTACC AAAAAGTTAC CCTGTGAAGA AAAATCATAT GAAAATTAGC AAAAAGATCT
GTGCTGCTGC TGTTGCAACA CCAACAACAA CTACTGAGGA AATTAAAGAG TACAAGCTTC CTTCTTGGGC TCAGTTTGAG
ATTGGAAGAG CTCCTGTGTA TTGGAAAACA ATGAATGGCC TCCCTCCTAC CTCAGGAGAA AAGCTAAAGC TTTTGTATAA
TCCAGCAGCA GCTCAACTAG TCCCTAGTGA AGAATTTGGA ATTGCTTTTA ATGGAGGTTT TAATCAGCCA ATTATGTGCG
GTGGTGAGCC AAGGGCTATG CTTCGAAAAA ATAGAGGCAA AGCTGATGCT CCAATATATA CCATTCAGAT ATGCATTCCA
AAGCATGCTC TGAACTTGAT CTTCTCATTT ACTAATGGAG TAGACTGGGA TGGTCCATAC AGACTGCAAT TTGAAGTTCC
TAAGGCTTTA AAGAACAAGC CAATTGAGTT TTTTAATAGG GGTTTGGCAG ATGAACTGAG TAAAGAAGGA GCATGTGAGC
AGGCAATATT TCCAGACACA AACGTAGTTA TATCAAGATG TGCTATGATT GGTAATTTGT CAAAAGAAGG GGGTGATCGT
TGCGATCTGA ATCTTGTTTT AGGATGCACA GATCCTAGTT CTCACCTGTA CAACCCACTA GCTAATGTAG ATGATGGAAC
ATGTCCAATT GATTTGGATT CTGAGTCTGA GGATTAG

>Vigan.09G224700.01
MAATNASFFA SSTQPCLPVS PTISNTLSSS FLNVSLPKSY PVKKNHMKIS KKICAAAVAT PTTTTEEIKE YKLPSWAQFE
IGRAPVYWKT MNGLPPTSGE KLKLLYNPAA AQLVPSEEFG IAFNGGFNQP IMCGGEPRAM LRKNRGKADA PIYTIQICIP
KHALNLIFSF TNGVDWDGPY RLQFEVPKAL KNKPIEFFNR GLADELSKEG ACEQAIFPDT NVVISRCAMI GNLSKEGGDR
CDLNLVLGCT DPSSHLYNPL ANVDDGTCPI DLDSESED*