GBrowse Details

Vigan.09G229500.01

Basic Information:
Name: Vigan.09G229500.01
Multiple alignment
Variant Information
Position: Chr09:36983046..36985399 (+ strand)
Length: 2354
Functional Information:
Description: Similar to Uncharacterized protein. [I1KGT7, Glycine max]
GO: Biological Process: cellular metabolic process (GO:0044237)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: coenzyme binding (GO:0050662)
InterPro: NAD-dependent epimerase/dehydratase (IPR001509)
NAD(P)-binding domain (IPR016040)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.18,0.18,5.36,3.83,3.78,7.57,3.08,5.19
Automatic updates:
Name: NM_001424898 NCBI(nuccore)
Organism: Medicago truncatula
Description: Medicago truncatula cinnamoyl-CoA reductase 1 (LOC11424763), mRNA.
PubMed ID: 31837401 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr09:36983046..36983285 (+ strand)
Length: 240
Type: five_prime_UTR
Position: Chr09:36983286..36983418 (+ strand)
Length: 133
Type: CDS
Position: Chr09:36983572..36983726 (+ strand)
Length: 155
Type: CDS
Position: Chr09:36983834..36984019 (+ strand)
Length: 186
Type: CDS
Position: Chr09:36984155..36984507 (+ strand)
Length: 353
Type: CDS
Position: Chr09:36984987..36985158 (+ strand)
Length: 172
Type: CDS
Position: Chr09:36985159..36985399 (+ strand)
Length: 241
Type: three_prime_UTR


>Vigan.09G229500.01
TGTAGATGCA GCTGCTTTTA CTAAATTAAA TGGTGTTTTA TGTTATAAAT CAGAGCAATT TGTAATAATA ATTTTAATAT
TATATTGAAT TTTTTGACAC ATTAGATGGA GAAGGGTGCA TGCAGGATTA TAAAAGGAAT CTTTGGGCAT GTTGATCTTC
GTATTCCATA ACCTGCAAAC TTCTTAGTGT TATTATTCCT TTAGTTTTGA TTCCTTTTCT CTCAATCAAT CGTCACCGAG
ATGCCAACTG ACACGTCATC ATTTTCCGGT GAAACCGTCT GCGTGACCGG CGCCGGCGGG TACATAGCTT CTTGGCTTGT
GAAAGTTCTG TTAGAGAAAG GTTACACTGT GAGAGGAACC GTTCGAAACC CAGAGGATCC GAAGAATGGT CACTTGAAGA
AGTTGGAAGG AGCGAAGGAG AGACTCACTC TGCATAAAGT TGATCTCTTT GATATTGATT CCATTAAAGC TGCTTTTCAC
GGTTGCCACG GCGTCTTCCA CACCGCTTCT CCGGTCACCG ACAACCCCGA AGAGATGGTG GAGCCAGCAG TGAATGGAAC
GAAGAATGTG ATAATAGCAG CTGCAGAAGC AAAAGTGCGG CGCGTGGTGT TCACTTCGTC AATTGGCACG GTGTATATGA
ACCCTAACAC GAGTAGGGAT GTGGTGGTTG ATGAATCATT CTGGAGTGAT TTGGAGTACT GCAAAAACAC CAAGAATTGG
TACTGCTATG GGAAGACGGT GGCTGAACAA TCAGCATGGG ATATAGCTAA AGAAAGAGGG GTGGATTTGG TTGTGGTGAA
CCCAGTTGTG GTTATTGGTC CATTGCTTCA ACCTACCATT AATGCTAGCA CAATTCACAT CCTGAAGTAC CTTACTGGCT
CTGCTAAGAC CTATGTAAAT GCCACACAGT CTTATGTACA TGTTAAGGAT GTCGCACTAG CCCATGTTCT TGTGTATGAG
ACTCCTTCAG CTTCTGGTCG ATACATATGT GCCGAAAGTT CACTGCATCG TGGTGACCTC GTTGAAATTT TGGGCAAGTT
TTTCCCAGAG TACCCAATTC CCACCAAATG TTCGGATGAA AAGAACCCGA GAGTAAAACC TTATATGTTT TCAAACCAAA
AGCTGAAAGA TTTGGGAATG GAATTCACCC CAGTGAAACA GAGTCTATAT GACACAGTTA AAAATCTGCA AGACAATGGC
CACCTTCCTG TGCTCCCAAA GCAAGAAAAC TCCTATTGAA GTTAAATCCT AACTAGCTAG GTTGCAATAC ATTAACAAGT
TTAAAGTAGT TATTATTAAA TGAATTTGTG TTGAGTTAAT TATATAAGAT CCTGAGAAGT CCGTGCATTC TGAGTTTGTA
AGACACACTC CATGCTAATT GCTGCCTTGT GTAAAAGTAA AATTGATAAT ATTAATGGAT TTTCCACCCT TTGTAATTAT
GCTTCTTTGC TTCAAGTTAT TGTCACATTC AGAAGATCAA 

>Vigan.09G229500.01
ATGCCAACTG ACACGTCATC ATTTTCCGGT GAAACCGTCT GCGTGACCGG CGCCGGCGGG TACATAGCTT CTTGGCTTGT
GAAAGTTCTG TTAGAGAAAG GTTACACTGT GAGAGGAACC GTTCGAAACC CAGAGGATCC GAAGAATGGT CACTTGAAGA
AGTTGGAAGG AGCGAAGGAG AGACTCACTC TGCATAAAGT TGATCTCTTT GATATTGATT CCATTAAAGC TGCTTTTCAC
GGTTGCCACG GCGTCTTCCA CACCGCTTCT CCGGTCACCG ACAACCCCGA AGAGATGGTG GAGCCAGCAG TGAATGGAAC
GAAGAATGTG ATAATAGCAG CTGCAGAAGC AAAAGTGCGG CGCGTGGTGT TCACTTCGTC AATTGGCACG GTGTATATGA
ACCCTAACAC GAGTAGGGAT GTGGTGGTTG ATGAATCATT CTGGAGTGAT TTGGAGTACT GCAAAAACAC CAAGAATTGG
TACTGCTATG GGAAGACGGT GGCTGAACAA TCAGCATGGG ATATAGCTAA AGAAAGAGGG GTGGATTTGG TTGTGGTGAA
CCCAGTTGTG GTTATTGGTC CATTGCTTCA ACCTACCATT AATGCTAGCA CAATTCACAT CCTGAAGTAC CTTACTGGCT
CTGCTAAGAC CTATGTAAAT GCCACACAGT CTTATGTACA TGTTAAGGAT GTCGCACTAG CCCATGTTCT TGTGTATGAG
ACTCCTTCAG CTTCTGGTCG ATACATATGT GCCGAAAGTT CACTGCATCG TGGTGACCTC GTTGAAATTT TGGGCAAGTT
TTTCCCAGAG TACCCAATTC CCACCAAATG TTCGGATGAA AAGAACCCGA GAGTAAAACC TTATATGTTT TCAAACCAAA
AGCTGAAAGA TTTGGGAATG GAATTCACCC CAGTGAAACA GAGTCTATAT GACACAGTTA AAAATCTGCA AGACAATGGC
CACCTTCCTG TGCTCCCAAA GCAAGAAAAC TCCTATTGA

>Vigan.09G229500.01
MPTDTSSFSG ETVCVTGAGG YIASWLVKVL LEKGYTVRGT VRNPEDPKNG HLKKLEGAKE RLTLHKVDLF DIDSIKAAFH
GCHGVFHTAS PVTDNPEEMV EPAVNGTKNV IIAAAEAKVR RVVFTSSIGT VYMNPNTSRD VVVDESFWSD LEYCKNTKNW
YCYGKTVAEQ SAWDIAKERG VDLVVVNPVV VIGPLLQPTI NASTIHILKY LTGSAKTYVN ATQSYVHVKD VALAHVLVYE
TPSASGRYIC AESSLHRGDL VEILGKFFPE YPIPTKCSDE KNPRVKPYMF SNQKLKDLGM EFTPVKQSLY DTVKNLQDNG
HLPVLPKQEN SY*