VIGGS:GBrowse

Vigan.09G230300.01

Basic Information:

Name:	Vigan.09G230300.01 Multiple alignment Variant Information
Position:	Chr09:37028251..37030229 (- strand)
Length:	1979

Functional Information:

Description:	Similar to Uncharacterized protein. [C3VD33, Glycine max]
GO:	Biological Process: phospholipid metabolic process (GO:0006644)
GO:	Molecular Function: N-methyltransferase activity (GO:0008170)
InterPro:	Phospholipid methyltransferase (IPR007318)
InterPro:	Phosphatidyl-N-methylethanolamine/N-methyltransferase (IPR024960)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:42.53,16.00,22.26,11.51,22.11,105.73,15.19,17.48
Arabidopsis thaliana homolog:	AT1G80860.2

Automatic updates:

Name:	NM_001249156 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max phospholipid N-methyltransferase (PLMT), mRNA.
PubMed ID:	19366698 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr09:37028251..37028558 (- strand)
Length:	308
Type:	three_prime_UTR

Position:	Chr09:37028559..37028808 (- strand)
Length:	250
Type:	CDS

Position:	Chr09:37029824..37030068 (- strand)
Length:	245
Type:	CDS

Position:	Chr09:37030069..37030229 (- strand)
Length:	161
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

>Vigan.09G230300.01 class=Sequence position=Chr09:37028251..37030229 (- strand)
CCAAATCTTG CTAGAAATCA ATTTCAAAAT AATGATTATT TTGGACCCAA CAAAAAACAC ATGGACAGTG TTTGTGTTCC
GGGTAGGTGA GAAGCAAGAA AAAGACAGCA TATGAGAGGT GAAGAAGCAG TGAGTTTCGG AAAAAGAGGA TCTGCAGAGT
TATGGGAATA GCGGCGGCTA TCGGAGTGTT GTCACCGTTT CCGTTCTATT ACTGTCTCTG GAATTGGCCC CAATCATGGG
TGGAGCTGTG TGGTAGAGGC AGAGACCCTT CTAATGTTAT GGCTCACGTT GCTCATTTCT TGAAGCTCGT TCAGTTCATC
TCCCTCTTTT CTGTCTCTTC ATTTCATTGG CCTCCTCCAT TATACTTTTG GCCCCTCTTT GCTTTTGGCC AATTCCTAAA
CTTCAGGTTT GCCTCTCTTT CATCTTATTC CCGGCTCTTT TTTTTTTCTG GGTATGTTGC AACTTTCTGG ATCTTATACT
GGGGTTTATC AAGTTGCTTC CTTTATTTTC CTATACTATT GGATGCTGAA ATGAAGCATT TTTTTAACTG TGTTGTTTAT
TTGATAGTAT GATAGTTCGA TGATCTTTGT TGGCTTTTAG AAAAAAGAGT TTGTTTTAGG CCACCTTTGG ATTAAAGTTG
GAAAAGTACT TCTCGGAATT CCAGGAAACC AAAGGAAAGA AAGAAAATTT TGTACTTTCT TGAGTTAAAG CACTTTTGAA
TTGAACCCTC TAACTGCAAT CAAACGTACG GTGATGAATT CCATACTTCT AAAGTTGTCA GTCTTCCACT TTTGCAGTGT
TTAGTTTACT TTGTGTGTTT GTGCTTAAAA AAATAAGAAT AAAATCTGAA ATTAGTTTGT CTTTAAGTTA AAATTAGTTT
ATGAAGAAAC TCATTTTATG TTTCAACAAG ATGTCCTTCT GGAAATCTCG TCCTAACAAA TCTTGTATCA TGCTGTGGTA
TGAAGTTGTG ATGTCTCTGT TGGGGTGACT ATAGCTTCGC AGAAACCAGA GATAAACATA TTCTGTGGAT AAGCATATCA
TGACTGCAAA AGGCATGTTT TCAATGCTAA GTCTCATCAT GGAAACTAGA AAACAAAAAA CTCCTGTGTG TGATTAATAA
AAATGTTAAA ATAAATGGCT GCGTTTTACA AATTGTGAAT CCAATAGATC AAATACTGGT TTACGAATTA ATTTCCCTGA
ATGACATAAT AAATGTAGAA ATAGTGGGAG GAATGGCAGG TTTTCTGATG AAATACTTTT AGAATTTTCT AGCTTGTTCC
CCCTATCATT TCTAGCTTGT TCTTATGAGC CTTAATTTTT TTATCCTTGT GTGTGCCTTA CTTCTAATTA GGGAGTGCAG
TTACTTGACT TTATTGCTTT GAAGGTTGTC TGTGCATAAT GATAACATTG TCAAATAACA GGGTTTATCA GCTACTGGGT
GAGGCTGGCA CATACTATGG TGTACGTTTT GGAAAACATA TTCCCTGGGT TACTGAGTTC CCTTTTGGTG TCATCAGAGA
TCCTCAATAC GTTGGCAGCA TTACGAGTCT TCTTGCATGC CTCTCGTGGG TTCCTTTTCA ATACATTCTC CTTTGGGTTT
TAGGTTATGT GTTTATTATG CAAGTGGAAT CAAAGGAAGA TTCATCTACT CGTGCCAAGC CACTCCTCTG ATTGAATTTC
AGTAGGTTAG AAAGAATTTG AGGAACTCCA AATTCTTGAA TGCTGCTGTT TCTTTCCACA GCTCTGGAAT GAACGTTTCT
GTTTGTATGT TCTGATTCCA TCAAACTATT TCTAAGGAAC TGCAAAACTT CTTTCTGGTT CTTATGATAT TCAAACAAGC
CATAGCGTTA AGTAACTTTA ATGAATGCAA CGTCCACCTA TGATAGGGGG TTTTTCTTTT TTGTGTGTTG ATCAAAGAAG
AAAAGCATTT ATCTTTTTGT TTTTCGATAG TTTTATTTCT GTGTCTTTCA CTGTTTTCT

[show][hide][copy]TRANSCRIPT

>Vigan.09G230300.01
CCAAATCTTG CTAGAAATCA ATTTCAAAAT AATGATTATT TTGGACCCAA CAAAAAACAC ATGGACAGTG TTTGTGTTCC
GGGTAGGTGA GAAGCAAGAA AAAGACAGCA TATGAGAGGT GAAGAAGCAG TGAGTTTCGG AAAAAGAGGA TCTGCAGAGT
TATGGGAATA GCGGCGGCTA TCGGAGTGTT GTCACCGTTT CCGTTCTATT ACTGTCTCTG GAATTGGCCC CAATCATGGG
TGGAGCTGTG TGGTAGAGGC AGAGACCCTT CTAATGTTAT GGCTCACGTT GCTCATTTCT TGAAGCTCGT TCAGTTCATC
TCCCTCTTTT CTGTCTCTTC ATTTCATTGG CCTCCTCCAT TATACTTTTG GCCCCTCTTT GCTTTTGGCC AATTCCTAAA
CTTCAGGGTT TATCAGCTAC TGGGTGAGGC TGGCACATAC TATGGTGTAC GTTTTGGAAA ACATATTCCC TGGGTTACTG
AGTTCCCTTT TGGTGTCATC AGAGATCCTC AATACGTTGG CAGCATTACG AGTCTTCTTG CATGCCTCTC GTGGGTTCCT
TTTCAATACA TTCTCCTTTG GGTTTTAGGT TATGTGTTTA TTATGCAAGT GGAATCAAAG GAAGATTCAT CTACTCGTGC
CAAGCCACTC CTCTGATTGA ATTTCAGTAG GTTAGAAAGA ATTTGAGGAA CTCCAAATTC TTGAATGCTG CTGTTTCTTT
CCACAGCTCT GGAATGAACG TTTCTGTTTG TATGTTCTGA TTCCATCAAA CTATTTCTAA GGAACTGCAA AACTTCTTTC
TGGTTCTTAT GATATTCAAA CAAGCCATAG CGTTAAGTAA CTTTAATGAA TGCAACGTCC ACCTATGATA GGGGGTTTTT
CTTTTTTGTG TGTTGATCAA AGAAGAAAAG CATTTATCTT TTTGTTTTTC GATAGTTTTA TTTCTGTGTC TTTCACTGTT
TTCT

[show][hide][copy]CDS

>Vigan.09G230300.01
ATGGGAATAG CGGCGGCTAT CGGAGTGTTG TCACCGTTTC CGTTCTATTA CTGTCTCTGG AATTGGCCCC AATCATGGGT
GGAGCTGTGT GGTAGAGGCA GAGACCCTTC TAATGTTATG GCTCACGTTG CTCATTTCTT GAAGCTCGTT CAGTTCATCT
CCCTCTTTTC TGTCTCTTCA TTTCATTGGC CTCCTCCATT ATACTTTTGG CCCCTCTTTG CTTTTGGCCA ATTCCTAAAC
TTCAGGGTTT ATCAGCTACT GGGTGAGGCT GGCACATACT ATGGTGTACG TTTTGGAAAA CATATTCCCT GGGTTACTGA
GTTCCCTTTT GGTGTCATCA GAGATCCTCA ATACGTTGGC AGCATTACGA GTCTTCTTGC ATGCCTCTCG TGGGTTCCTT
TTCAATACAT TCTCCTTTGG GTTTTAGGTT ATGTGTTTAT TATGCAAGTG GAATCAAAGG AAGATTCATC TACTCGTGCC
AAGCCACTCC TCTGA

[show][hide][copy]PROTEIN

>Vigan.09G230300.01
MGIAAAIGVL SPFPFYYCLW NWPQSWVELC GRGRDPSNVM AHVAHFLKLV QFISLFSVSS FHWPPPLYFW PLFAFGQFLN
FRVYQLLGEA GTYYGVRFGK HIPWVTEFPF GVIRDPQYVG SITSLLACLS WVPFQYILLW VLGYVFIMQV ESKEDSSTRA
KPLL*