VIGGS:GBrowse

Vigan.09G232900.01

Basic Information:

Name:	Vigan.09G232900.01 Multiple alignment Variant Information
Position:	Chr09:37160864..37164995 (+ strand)
Length:	4132

Functional Information:

Description:	Similar to 26S protease regulatory subunit 8 homolog A-like. [XP_004504777.1, Cicer arietinum]
GO:	Biological Process: protein catabolic process (GO:0030163)
	Cellular Component: cytoplasm (GO:0005737)
	Molecular Function: nucleotide binding (GO:0000166)
	Molecular Function: ATP binding (GO:0005524)
	Molecular Function: hydrolase activity (GO:0016787)
	Molecular Function: nucleoside-triphosphatase activity (GO:0017111)
InterPro:	AAA+ ATPase domain (IPR003593)
	ATPase, AAA-type, core (IPR003959)
	ATPase, AAA-type, conserved site (IPR003960)
	26S proteasome subunit P45 (IPR005937)
	P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:633.81,295.44,100.12,77.65,127.64,155.96,92.06,79.09
Arabidopsis thaliana homolog:	AT5G19990.1, AT5G20000.1

Automatic updates:

Name:	NM_001254623 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max 26S protease regulatory subunit 8 homolog A-like (LOC100812783), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr09:37160864..37161041 (+ strand)
Length:	178
Type:	five_prime_UTR

Position:	Chr09:37161042..37161237 (+ strand)
Length:	196
Type:	CDS

Position:	Chr09:37161329..37161426 (+ strand)
Length:	98
Type:	CDS

Position:	Chr09:37161851..37162075 (+ strand)
Length:	225
Type:	CDS

Position:	Chr09:37162288..37162350 (+ strand)
Length:	63
Type:	CDS

Position:	Chr09:37162452..37162615 (+ strand)
Length:	164
Type:	CDS

Position:	Chr09:37163200..37163356 (+ strand)
Length:	157
Type:	CDS

Position:	Chr09:37163551..37163649 (+ strand)
Length:	99
Type:	CDS

Position:	Chr09:37163762..37163872 (+ strand)
Length:	111
Type:	CDS

Position:	Chr09:37164560..37164700 (+ strand)
Length:	141
Type:	CDS

Position:	Chr09:37164701..37164995 (+ strand)
Length:	295
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.09G232900.01
AGGCAAGTAG CAGTACTTGA ACCGGTTTGT TTTTGGTATT TTCTTTGTAC AGACCGACAT AAGCCGGGAA GAGAGAAGAG
AAGAGAAGAG AAGAAGAGAG AGGATCGGGA AGGTGGTGGT TTGGGTTTTG CTCTGATTTT CATCGCCGAA AGGCAGAGAG
AGATCTATCT TTGTATCTAT GGCTCTTGCG GGAGTTGAAG TGAAGCATGT GGAGGGTGTG CCGGAGGAGA ATTGCTCCGC
CAAGCCCACC AAGCAGGGCG AGGGTCTCCG CCACTACTAT TCTCTCAACA TCCACGAGCA TCAGCTCCTT CTCCGTCAAA
AGACGCATAA CCTCAACCGT CTTGAGGCTC AGCGTAACGA GCTCAATTCC AGGGTGAGGA TGCTACGCGA AGAGTTGCAG
CTTCTTCAGG AGCCTGGCTC CTATGTTGGT GAAGTTGTCA AAGTGATGGG CAAGAACAAA GTCCTTGTCA AGGTCCACCC
AGAAGGAAAA TATGTTGTCG ACATTGACAA AAATATTGAC ATTACAAAGA TCACTCCATC CACTAGAGTT GCACTTCGCA
ATGATAGCTA TGTTCTTCAT TTAGTTCTGC CCAGTAAAGT TGATCCGTTG GTCAATCTGA TGAAAGTTGA GAAAGTTCCT
GATTCTACGT ATGACATGAT TGGTGGTTTA GACCAGCAAA TCAAAGAAAT CAAGGAGGTT ATCGAGCTAC CAATTAAGCA
TCCTGAGCTC TTTGAGAGTC TTGGAATTGC ACAACCAAAG GGTGTCCTGC TGTATGGGCC ACCTGGTACA GGTAAAACGT
TGTTGGCTAG GGCAGTGGCG CATCATACTG ACTGTACGTT CATAAGGGTG TCTGGTTCTG AATTGGTTCA GAAGTACATT
GGAGAAGGTT CTAGAATGGT CAGGGAACTT TTCGTTATGG CCAGGGAACA TGCTCCATCA ATTATCTTCA TGGACGAAAT
CGACAGCATT GGATCTGCTC GGATGGAATC TGGAAGTGGC AATGGTGATA GTGAGGTACA GCGTACTATG CTGGAACTTC
TCAACCAGTT GGATGGATTT GAAGCTTCAA ATAAGATCAA GGTTTTGATG GCAACAAATA GGATTGATAT CTTGGATCAA
GCTCTCCTTA GACCTGGACG GATTGATAGG AAGATTGAAT TTCCTAACCC TAATGAAGAG TCTCGGCTGG ATATTTTGAA
AATCCATTCA AGGAGAATGA ATTTAATGCG TGGCATTGAT TTAAAGAAGA TTGCTGAGAA GATGAATGGA GCATCTGGTG
CTGAACTTAA GGCTGTATGC ACTGAAGCCG GTATGTTTGC TTTGAGGGAG AGGAGGGTAC ACGTGACTCA GGAGGATTTT
GAGATGGCTG TGGCCAAGGT GATGAAAAAG GAGACTGAAA AAAATATGTC ATTGCGGAAG TTGTGGAAGT GATTTTTATT
TTATGTTTCT GGTGCACTTA TCTTGTTAAG TCGGACAACA AAATCACCTT AGGGTTTCAA TTTACGGTGG CATTGGTTTT
TTCCTTTTGA TTTAAGTTTA CCATGTTATG TACCAAATGA TTCTTTCCAG TTGAGTTTCT TCATTCTGTG TCTTCGTACT
GCACACAACA TTTATAGAGT ATTTTACAAA AATTCTCATT AAAGACCACT ATGTAGTCTA AACCAGTGAA AATAACTGAT
ATATTAATAA ATTTGGTAAT GAAGATGATA TAATATTAAG TTTTATA

[show][hide][copy]CDS

>Vigan.09G232900.01
ATGGCTCTTG CGGGAGTTGA AGTGAAGCAT GTGGAGGGTG TGCCGGAGGA GAATTGCTCC GCCAAGCCCA CCAAGCAGGG
CGAGGGTCTC CGCCACTACT ATTCTCTCAA CATCCACGAG CATCAGCTCC TTCTCCGTCA AAAGACGCAT AACCTCAACC
GTCTTGAGGC TCAGCGTAAC GAGCTCAATT CCAGGGTGAG GATGCTACGC GAAGAGTTGC AGCTTCTTCA GGAGCCTGGC
TCCTATGTTG GTGAAGTTGT CAAAGTGATG GGCAAGAACA AAGTCCTTGT CAAGGTCCAC CCAGAAGGAA AATATGTTGT
CGACATTGAC AAAAATATTG ACATTACAAA GATCACTCCA TCCACTAGAG TTGCACTTCG CAATGATAGC TATGTTCTTC
ATTTAGTTCT GCCCAGTAAA GTTGATCCGT TGGTCAATCT GATGAAAGTT GAGAAAGTTC CTGATTCTAC GTATGACATG
ATTGGTGGTT TAGACCAGCA AATCAAAGAA ATCAAGGAGG TTATCGAGCT ACCAATTAAG CATCCTGAGC TCTTTGAGAG
TCTTGGAATT GCACAACCAA AGGGTGTCCT GCTGTATGGG CCACCTGGTA CAGGTAAAAC GTTGTTGGCT AGGGCAGTGG
CGCATCATAC TGACTGTACG TTCATAAGGG TGTCTGGTTC TGAATTGGTT CAGAAGTACA TTGGAGAAGG TTCTAGAATG
GTCAGGGAAC TTTTCGTTAT GGCCAGGGAA CATGCTCCAT CAATTATCTT CATGGACGAA ATCGACAGCA TTGGATCTGC
TCGGATGGAA TCTGGAAGTG GCAATGGTGA TAGTGAGGTA CAGCGTACTA TGCTGGAACT TCTCAACCAG TTGGATGGAT
TTGAAGCTTC AAATAAGATC AAGGTTTTGA TGGCAACAAA TAGGATTGAT ATCTTGGATC AAGCTCTCCT TAGACCTGGA
CGGATTGATA GGAAGATTGA ATTTCCTAAC CCTAATGAAG AGTCTCGGCT GGATATTTTG AAAATCCATT CAAGGAGAAT
GAATTTAATG CGTGGCATTG ATTTAAAGAA GATTGCTGAG AAGATGAATG GAGCATCTGG TGCTGAACTT AAGGCTGTAT
GCACTGAAGC CGGTATGTTT GCTTTGAGGG AGAGGAGGGT ACACGTGACT CAGGAGGATT TTGAGATGGC TGTGGCCAAG
GTGATGAAAA AGGAGACTGA AAAAAATATG TCATTGCGGA AGTTGTGGAA GTGA

[show][hide][copy]PROTEIN

>Vigan.09G232900.01
MALAGVEVKH VEGVPEENCS AKPTKQGEGL RHYYSLNIHE HQLLLRQKTH NLNRLEAQRN ELNSRVRMLR EELQLLQEPG
SYVGEVVKVM GKNKVLVKVH PEGKYVVDID KNIDITKITP STRVALRNDS YVLHLVLPSK VDPLVNLMKV EKVPDSTYDM
IGGLDQQIKE IKEVIELPIK HPELFESLGI AQPKGVLLYG PPGTGKTLLA RAVAHHTDCT FIRVSGSELV QKYIGEGSRM
VRELFVMARE HAPSIIFMDE IDSIGSARME SGSGNGDSEV QRTMLELLNQ LDGFEASNKI KVLMATNRID ILDQALLRPG
RIDRKIEFPN PNEESRLDIL KIHSRRMNLM RGIDLKKIAE KMNGASGAEL KAVCTEAGMF ALRERRVHVT QEDFEMAVAK
VMKKETEKNM SLRKLWK*