GBrowse Details

Vigan.10G012000.01

Basic Information:
Name: Vigan.10G012000.01
Multiple alignment
Variant Information
Position: Chr10:1140354..1144379 (+ strand)
Length: 4026
Functional Information:
Description: Similar to Uncharacterized protein. [I1ND06, Glycine max]
InterPro: Mad3/BUB1 homology region 1 (IPR013212)
Mitotic checkpoint serine/threonine protein kinase Bub1/Mitotic spindle checkpoint component Mad3 (IPR015661)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.00,5.48,1.42,4.33,2.30,2.68,2.64
Arabidopsis thaliana homolog: AT2G33560.2
Structure :
Position: Chr10:1140354..1140504 (+ strand)
Length: 151
Type: five_prime_UTR
Position: Chr10:1140505..1140707 (+ strand)
Length: 203
Type: CDS
Position: Chr10:1140798..1140857 (+ strand)
Length: 60
Type: CDS
Position: Chr10:1141837..1141981 (+ strand)
Length: 145
Type: CDS
Position: Chr10:1142063..1142220 (+ strand)
Length: 158
Type: CDS
Position: Chr10:1142594..1142678 (+ strand)
Length: 85
Type: CDS
Position: Chr10:1142771..1142834 (+ strand)
Length: 64
Type: CDS
Position: Chr10:1142915..1142969 (+ strand)
Length: 55
Type: CDS
Position: Chr10:1143187..1143346 (+ strand)
Length: 160
Type: CDS
Position: Chr10:1143466..1143548 (+ strand)
Length: 83
Type: CDS
Position: Chr10:1143883..1143960 (+ strand)
Length: 78
Type: CDS
Position: Chr10:1144051..1144114 (+ strand)
Length: 64
Type: CDS
Position: Chr10:1144115..1144379 (+ strand)
Length: 265
Type: three_prime_UTR


>Vigan.10G012000.01
GTAACGGCTA GTTGGTGAGA ATAAGCATAA TTTATATTTT CAAAATTTGA ATCACAAAAC CGAACACCGC TCCCTCTTCA
CCTTCAACAA GTTCTTCCCT TTTTCCCCTT TCCCTTCAGA GAGCGAAGAG AATCGTTTCA GTGCAGCAAC AATGGCGGAG
GCTGAGATCA AGAACACAAC AATCGATCCA GAGAGCGAGT TTCTGGCGTC GAAGAGAACC AACGGTAACG AGTGGGAGAT
CTTCAAGGAG AACGTGAGGC CGCTGAAGCG AGGCCGCAAC GTTAACCTCC TCAATCACGC CCTCAAATCC CACACCCACA
CTCACCTCAA GAAATCCATC CTCCAACATC GAAGGAAACT CATCGAAGCC ATCGACGAAT ACCAGGGAGA CGACCCTCTC
CTCCCCTGGC TAGAGTGTAT CAAGTGGGTT CAGGAAGCGT TTCCTCCCGG TGGAGACAGT TCCGGGCTGG TGGTGATTTA
TGAACAGTGT GTGCGTGCCT TTTGGCATTC AGAGCGCTAT AAGGATGATC TGCGCTACCT CAAAGTGTGG CTTGAATATG
CAGATAATTG CTTTGATGCA GAAGTTATTT ATGCTTTTCT GGATGCAAAT GGAATTGGAA AATCTCATTC CAATTTCTAC
GTTTCCTATG CTTTGCACTT GGAATCTAAG AACAAGTTTA AAGCTGCCAA CCAGATATTC GAGCTTGGCA TATCCAGGAA
TGCTCAACCA GATGACAAAT TGAAGGCTGC TTACAGAAAA TTTCTTGCAC ACTCGCTGGC AAGGTCAACA ACAGCTAAAG
ATGATTCAGT AGAAAAAGTG GCACCCTCAC GTAGCTTTGG AACTGTTCTT GGCAATCGAG AAAATCGTTC TTCCCTGTCC
ACTTTGACCA CGAACTGTGA TCTTTCTGCT AAGAATGATA GGATTCGAGC AGCTCCATTT TCCATCTATA AAGATTCAGC
TGCAACTGGT GAAACTGATC CCCATCATCC AGACCAATCG CACTCTTGGC ACACACTTGG AGCTCGAGCT GACAGAAATA
AGGAAAACAA TCCTATTCCT GGGAGGTGGG AATCCTTTAA GGTTCCACAG CGAGTTGGAA CAAGAGCTGG AGGGGCTACT
CCAAGTGCCT TTATCCCAGT TTTTGTTGAT GAAGAATGTC AAGATTCACA AAGTACAAAA GAAGAGGGCC CTAAGTGCAC
AAGTTTGAAG ATTAAGCAGG ATGACGACAA GGAATTGAAA AGGGAAACAG AACTACTAAG GAAGAATCCA CTACGCAACT
TTCCTCAGAA CAGCCTCCCC AGATAATTCA TTCAACCTCT TTGAGAATGT CATCGTTTCT TCAATAATTT TGGCTCAGCT
TTCCCCCTAG AAAGCTTTGA CCCACATTTA CTTTAAGTTG GTACTGGTAT TTGTGGTTAA AAACGATGTC CGAATTGTTT
GGTTAAGAAA ATTTTAATGT GTGAACTGGA CATTACTTCG AATCAATTCA GTTCATTGGC AAAACTCTAA TATTTGTAAT
TATTATTATT CTGAAATGTT ATTATTATTA TTTCATTATG AATAACAAAA A

>Vigan.10G012000.01
ATGGCGGAGG CTGAGATCAA GAACACAACA ATCGATCCAG AGAGCGAGTT TCTGGCGTCG AAGAGAACCA ACGGTAACGA
GTGGGAGATC TTCAAGGAGA ACGTGAGGCC GCTGAAGCGA GGCCGCAACG TTAACCTCCT CAATCACGCC CTCAAATCCC
ACACCCACAC TCACCTCAAG AAATCCATCC TCCAACATCG AAGGAAACTC ATCGAAGCCA TCGACGAATA CCAGGGAGAC
GACCCTCTCC TCCCCTGGCT AGAGTGTATC AAGTGGGTTC AGGAAGCGTT TCCTCCCGGT GGAGACAGTT CCGGGCTGGT
GGTGATTTAT GAACAGTGTG TGCGTGCCTT TTGGCATTCA GAGCGCTATA AGGATGATCT GCGCTACCTC AAAGTGTGGC
TTGAATATGC AGATAATTGC TTTGATGCAG AAGTTATTTA TGCTTTTCTG GATGCAAATG GAATTGGAAA ATCTCATTCC
AATTTCTACG TTTCCTATGC TTTGCACTTG GAATCTAAGA ACAAGTTTAA AGCTGCCAAC CAGATATTCG AGCTTGGCAT
ATCCAGGAAT GCTCAACCAG ATGACAAATT GAAGGCTGCT TACAGAAAAT TTCTTGCACA CTCGCTGGCA AGGTCAACAA
CAGCTAAAGA TGATTCAGTA GAAAAAGTGG CACCCTCACG TAGCTTTGGA ACTGTTCTTG GCAATCGAGA AAATCGTTCT
TCCCTGTCCA CTTTGACCAC GAACTGTGAT CTTTCTGCTA AGAATGATAG GATTCGAGCA GCTCCATTTT CCATCTATAA
AGATTCAGCT GCAACTGGTG AAACTGATCC CCATCATCCA GACCAATCGC ACTCTTGGCA CACACTTGGA GCTCGAGCTG
ACAGAAATAA GGAAAACAAT CCTATTCCTG GGAGGTGGGA ATCCTTTAAG GTTCCACAGC GAGTTGGAAC AAGAGCTGGA
GGGGCTACTC CAAGTGCCTT TATCCCAGTT TTTGTTGATG AAGAATGTCA AGATTCACAA AGTACAAAAG AAGAGGGCCC
TAAGTGCACA AGTTTGAAGA TTAAGCAGGA TGACGACAAG GAATTGAAAA GGGAAACAGA ACTACTAAGG AAGAATCCAC
TACGCAACTT TCCTCAGAAC AGCCTCCCCA GATAA

>Vigan.10G012000.01
MAEAEIKNTT IDPESEFLAS KRTNGNEWEI FKENVRPLKR GRNVNLLNHA LKSHTHTHLK KSILQHRRKL IEAIDEYQGD
DPLLPWLECI KWVQEAFPPG GDSSGLVVIY EQCVRAFWHS ERYKDDLRYL KVWLEYADNC FDAEVIYAFL DANGIGKSHS
NFYVSYALHL ESKNKFKAAN QIFELGISRN AQPDDKLKAA YRKFLAHSLA RSTTAKDDSV EKVAPSRSFG TVLGNRENRS
SLSTLTTNCD LSAKNDRIRA APFSIYKDSA ATGETDPHHP DQSHSWHTLG ARADRNKENN PIPGRWESFK VPQRVGTRAG
GATPSAFIPV FVDEECQDSQ STKEEGPKCT SLKIKQDDDK ELKRETELLR KNPLRNFPQN SLPR*