GBrowse Details

Vigan.10G023300.01

Basic Information:
Name: Vigan.10G023300.01
Multiple alignment
Variant Information
Position: Chr10:2027803..2033424 (+ strand)
Length: 5622
Functional Information:
Description: Similar to mediator of RNA polymerase II transcription subunit 18-like isoform X2. [XP_004487936.1, Cicer arietinum]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:13.29,6.91,8.09,8.45,11.94,20.17,17.61,9.29
Arabidopsis thaliana homolog: AT2G22370.1
Automatic updates:
Name: NM_001249801 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500095 (LOC100500095), transcript variant 4, mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001254488 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max mediator of RNA polymerase II transcription subunit 18-like (LOC100803031), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001363044 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500095 (LOC100500095), transcript variant 2, mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001363045 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500095 (LOC100500095), transcript variant 3, mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:2027803..2028101 (+ strand)
Length: 299
Type: five_prime_UTR
Position: Chr10:2028102..2028158 (+ strand)
Length: 57
Type: CDS
Position: Chr10:2030322..2030421 (+ strand)
Length: 100
Type: CDS
Position: Chr10:2031559..2031616 (+ strand)
Length: 58
Type: CDS
Position: Chr10:2031712..2032068 (+ strand)
Length: 357
Type: CDS
Position: Chr10:2033069..2033171 (+ strand)
Length: 103
Type: CDS
Position: Chr10:2033172..2033424 (+ strand)
Length: 253
Type: three_prime_UTR


>Vigan.10G023300.01
ATCTCAGTAG AAACTAAGCA GGTCAATTAA CCTCTTATTC CCCATTTGTT TCTTTATGTG CATTAGTTTT CAAAGTTTTT
ATGATTTGAG TTTTAGGTTT TCGCTGCTTT CCTTTCATTC TTCACTCTTC GTTATTACAG TGTTCCAGTA AAACTAAAAT
CAAAATTACA AAATAGATAC ATGTAAGTGC ACAAAACACT TGTCTGTGAT CTTTTGCTTC ACAGTATGCA CAAAACGTAA
GATCTTTCGT TTTGAAAGGC AATTTTGACT TCCATAATAC GCATATCTTT TGTGTAATAA TGCAGGTGAG CTTAGCGAAT
ATGGAATGTG TGGTTCAGGG AATTATAGAG ACACAGCATG TTGAGGCTTT GGAGATTCTT CTTCAAGGAC TATGTGGTGT
TCAGAGAGAA CGATTGAGGA TACATGAAAT ATGTCTCAAG AGTGGTCCCC ATCTGGGCAG TGTAACCTCA GAAGTTCGAC
TCCTGTGTGA CCTAGAGCAA GCTGAACCTT CGTGGACTGT TAGACATGTA GGTGGTGCAA TGAGGGGTGC AGGTGCAGAG
CAAATTTCTG TTCTGGTTAG GTCAATGGTG GAAAGCAAAA CAAGCAAAAA TGTTCTTCGT TTGTTTTATA CACTGGGTTA
CAAATTAGAT CATGAGCTTC TGAGGGTGGG ATTTTCCTTC AATTTCTACC GGGGTGCACA AATCACTGTA ACAGTTTCAT
CAATCAATAA AATGCTGAAG TTGCATGCAA CTGACGAGGC GGTGCCAGTA ACACCTGGTA TACAAATGGT CGAAGTAACA
GCACCTGCAG TTGCTGAAAC CTACACTGAA GTTGCTGCTG CTGTATCATC CTTCTGTGAA TACCTTGCAC CGCTTCTCCA
CCTGTCCAAA CCAGGCATTT CAACCGGTGT TGTACCTACT GCTGCTGCAG CTGCTGCATC TCTAATGTCG GATGGCGGGG
GCACAACATT ATAGTGAGAT TGTATTGTTA CTTTAAGAAA CACAATTTAT GTACATCACT TGCTAAATTG CTTTAAAGAC
ACGTCAACGT AAAATTTTCA CTTCACATGA ACATGTCAAG TTTTAACATT GGAGTATGCC GTGTATTTAT GAATTGCTTC
GTGATCATAT AGAACTGTAA TGTAATTGTT TCAAGCTTTT GGGAGTAGGA TTTATTCAGA AGAGAAGAAA AGAATCAGAT
GCGTGGCTAA ATGTTTAATA TGTTAAA

>Vigan.10G023300.01
ATGCAGGTGA GCTTAGCGAA TATGGAATGT GTGGTTCAGG GAATTATAGA GACACAGCAT GTTGAGGCTT TGGAGATTCT
TCTTCAAGGA CTATGTGGTG TTCAGAGAGA ACGATTGAGG ATACATGAAA TATGTCTCAA GAGTGGTCCC CATCTGGGCA
GTGTAACCTC AGAAGTTCGA CTCCTGTGTG ACCTAGAGCA AGCTGAACCT TCGTGGACTG TTAGACATGT AGGTGGTGCA
ATGAGGGGTG CAGGTGCAGA GCAAATTTCT GTTCTGGTTA GGTCAATGGT GGAAAGCAAA ACAAGCAAAA ATGTTCTTCG
TTTGTTTTAT ACACTGGGTT ACAAATTAGA TCATGAGCTT CTGAGGGTGG GATTTTCCTT CAATTTCTAC CGGGGTGCAC
AAATCACTGT AACAGTTTCA TCAATCAATA AAATGCTGAA GTTGCATGCA ACTGACGAGG CGGTGCCAGT AACACCTGGT
ATACAAATGG TCGAAGTAAC AGCACCTGCA GTTGCTGAAA CCTACACTGA AGTTGCTGCT GCTGTATCAT CCTTCTGTGA
ATACCTTGCA CCGCTTCTCC ACCTGTCCAA ACCAGGCATT TCAACCGGTG TTGTACCTAC TGCTGCTGCA GCTGCTGCAT
CTCTAATGTC GGATGGCGGG GGCACAACAT TATAG

>Vigan.10G023300.01
MQVSLANMEC VVQGIIETQH VEALEILLQG LCGVQRERLR IHEICLKSGP HLGSVTSEVR LLCDLEQAEP SWTVRHVGGA
MRGAGAEQIS VLVRSMVESK TSKNVLRLFY TLGYKLDHEL LRVGFSFNFY RGAQITVTVS SINKMLKLHA TDEAVPVTPG
IQMVEVTAPA VAETYTEVAA AVSSFCEYLA PLLHLSKPGI STGVVPTAAA AAASLMSDGG GTTL*