GBrowse Details

Vigan.10G025000.01

Basic Information:
Name: Vigan.10G025000.01
Multiple alignment
Variant Information
Position: Chr10:2211115..2215216 (- strand)
Length: 4102
Functional Information:
Description: Similar to Uncharacterized protein. [I1J6R9, Glycine max]
GO: Cellular Component: integral to membrane (GO:0016021)
InterPro: Cytochrome b561, eukaryote (IPR004877)
Cytochrome b561/ferric reductase transmembrane (IPR006593)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.22,10.36,10.43,5.89,6.94,26.35,6.36,11.83
Arabidopsis thaliana homolog: AT1G26100.1
Automatic updates:
Name: NM_001250172 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527512 (LOC100527512), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:2211115..2211232 (- strand)
Length: 118
Type: three_prime_UTR
Position: Chr10:2211233..2211556 (- strand)
Length: 324
Type: CDS
Position: Chr10:2214441..2214637 (- strand)
Length: 197
Type: CDS
Position: Chr10:2214741..2214792 (- strand)
Length: 52
Type: CDS
Position: Chr10:2214873..2215025 (- strand)
Length: 153
Type: CDS
Position: Chr10:2215026..2215216 (- strand)
Length: 191
Type: five_prime_UTR


>Vigan.10G025000.01
TACATTAAAA ATATAAAATT TATTTAAGTA TTTGAAACTT AATTACATCT CTTAAAAATA AACCATAAAA AAAAATTGTC
TGGGAAGACA TCTATTTTCA GTAGAATTTT TGTTGAAAGT GTTGGTGTAG TGATAGCTAG TTCACCCAAA TGAAAAAGGT
GCAGTGTCGG CAAGAGCGAG TGTGAGTGAG TATGGGCACT GTGTATTCTC CCTCGCTCCT TGCTCTCCTG TTCTTGGCTA
GAGTTGCAGG TCTTGCAGTG GCAGTGCTTG TACTCATCTG GGCCCTTGCC TTCAAATCTA GCTTCCTCAC TCCTTCACTC
TCCCAACAAG ACCTTCTCTA TGCAGTTCTT CATCCTCTCC TCATGGTCAT CGGCTTCATT CTGTTAAGTG GAGAAGCAAT
TTTGGTTCAC CGGTGGTTAC CTGGATCAAG GGGCTTCAAG AAATTGGTGC ATCTGTGGCT TCAAGGGGTA GCTTTGGGTT
GTGGGATCTT TGGGATTTGG ACAAGGTTTC AGGGAAAAGA TGGGGTTGTT GCAAATTTCT TTAGCCTCCA TTCATGGATG
GGTTTGGTTT GTGTTTCCCT CTTTGCAGCC CAGTGGGTGA TTGGGTTCTT GAACTTTTGG CACCGAGGAG AAGGGCGCAG
GGTAAGGATA AGGGTGTTAC CATGGCACGT GTTCCTTGGT CTATACACCT ATGCATTGGC AATAGCAACA GCAGAAACTG
GTTTGTTAGA GAAGGTAACA TTCTTACAAA CAATGAGAAA TGTCTCCAAG CACAGCACTG AGGCCATGGT GGTTAATGCT
TTAGGTTTGG TTCTTGCCCT CCTCAGTGCC TTTGTCATTT TGGCTGCTGT TTCACCTAAG TATCAAACCA TTCAGACCAA
ACTTTTGTAC TCAGATACTA CCACTTTCTC ATCTTAATAA GCTGCATTAC ACACCAATGT TTTCAACTTT GTTAGAGACA
ACTGTAAATA AACAGGTTTG AAGAGAGATA TTTTCATGAA TTTCAATATT TTTAATTGAT TATTTATTAA GAAAT

>Vigan.10G025000.01
ATGGGCACTG TGTATTCTCC CTCGCTCCTT GCTCTCCTGT TCTTGGCTAG AGTTGCAGGT CTTGCAGTGG CAGTGCTTGT
ACTCATCTGG GCCCTTGCCT TCAAATCTAG CTTCCTCACT CCTTCACTCT CCCAACAAGA CCTTCTCTAT GCAGTTCTTC
ATCCTCTCCT CATGGTCATC GGCTTCATTC TGTTAAGTGG AGAAGCAATT TTGGTTCACC GGTGGTTACC TGGATCAAGG
GGCTTCAAGA AATTGGTGCA TCTGTGGCTT CAAGGGGTAG CTTTGGGTTG TGGGATCTTT GGGATTTGGA CAAGGTTTCA
GGGAAAAGAT GGGGTTGTTG CAAATTTCTT TAGCCTCCAT TCATGGATGG GTTTGGTTTG TGTTTCCCTC TTTGCAGCCC
AGTGGGTGAT TGGGTTCTTG AACTTTTGGC ACCGAGGAGA AGGGCGCAGG GTAAGGATAA GGGTGTTACC ATGGCACGTG
TTCCTTGGTC TATACACCTA TGCATTGGCA ATAGCAACAG CAGAAACTGG TTTGTTAGAG AAGGTAACAT TCTTACAAAC
AATGAGAAAT GTCTCCAAGC ACAGCACTGA GGCCATGGTG GTTAATGCTT TAGGTTTGGT TCTTGCCCTC CTCAGTGCCT
TTGTCATTTT GGCTGCTGTT TCACCTAAGT ATCAAACCAT TCAGACCAAA CTTTTGTACT CAGATACTAC CACTTTCTCA
TCTTAA

>Vigan.10G025000.01
MGTVYSPSLL ALLFLARVAG LAVAVLVLIW ALAFKSSFLT PSLSQQDLLY AVLHPLLMVI GFILLSGEAI LVHRWLPGSR
GFKKLVHLWL QGVALGCGIF GIWTRFQGKD GVVANFFSLH SWMGLVCVSL FAAQWVIGFL NFWHRGEGRR VRIRVLPWHV
FLGLYTYALA IATAETGLLE KVTFLQTMRN VSKHSTEAMV VNALGLVLAL LSAFVILAAV SPKYQTIQTK LLYSDTTTFS
S*