GBrowse Details

Vigan.10G031400.01

Basic Information:
Name: Vigan.10G031400.01
Multiple alignment
Variant Information
Position: Chr10:3036524..3041519 (+ strand)
Length: 4996
Functional Information:
Description: Similar to auxin efflux carrier protein. [W6JJ48, Phaseolus angularis]
GO: Biological Process: transmembrane transport (GO:0055085)
Cellular Component: integral to membrane (GO:0016021)
InterPro: Auxin efflux carrier (IPR004776)
Auxin efflux carrier, plant type (IPR014024)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.04,0.25,0.74,2.69,0.24,0.75,1.04,10.03
Arabidopsis thaliana homolog: AT1G23080.1, AT1G70940.1, AT1G73590.1, AT2G01420.2, AT5G57090.1
Automatic updates:
Name: NM_001280570 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max PIN auxin efflux transporter family protein (GMPIN3D), mRNA.
PubMed ID: 26572792 NCBI(pubmed)
Status: Known Variant
Name: NM_001329825 NCBI(nuccore)
Organism: Vigna angularis
Description: Vigna angularis auxin efflux carrier component 4 (LOC108336053), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:3036524..3036903 (+ strand)
Length: 380
Type: five_prime_UTR
Position: Chr10:3036904..3038113 (+ strand)
Length: 1210
Type: CDS
Position: Chr10:3038600..3038912 (+ strand)
Length: 313
Type: CDS
Position: Chr10:3039226..3039311 (+ strand)
Length: 86
Type: CDS
Position: Chr10:3039986..3040143 (+ strand)
Length: 158
Type: CDS
Position: Chr10:3040789..3040865 (+ strand)
Length: 77
Type: CDS
Position: Chr10:3040961..3041027 (+ strand)
Length: 67
Type: CDS
Position: Chr10:3041028..3041519 (+ strand)
Length: 492
Type: three_prime_UTR


>Vigan.10G031400.01
TTAAAGTACA CATACCCATG TTCAATAACA CCAAAGTGGT CCCTCTCTAC CCATCCCAAA AAATAATACT ACACAAGAAA
ATAAATACTC ATCCATACAC ATAATACTTC CCCCATGCCC TATATATACT CCCTGCAACC ATCCCCTTTC TACTCTGTCA
ATCAATTCAG GCTTTTTCTC TCCCTTTTCT CTCACACTTC ATTCTGCACA CACTCATACA CAAACTTAGT AAACCAGTAA
CCAGAGCAGT AGCACGCAAT CCACCAAACT GCATAGCTGG GATCGTATTG GATCCAGTTA AAACATTTAC CATCAACAAC
TTTTTAGATA AACCCGAGAC TTCAAACGCA AAATCAAGTC TTCATTATCA GGAAAAGAAG ATGATAACAT GGAAAGACCT
GTACACGGTG CTCACGGCAG TGGTGCCTCT GTATGTGGCC ATGATCCTGG CTTACGGTTC CGTGCGGTGG TGGAAGATAT
TCTCGCCGGA CCAGTGCTCC GGCATAAACC GCTTTGTGGC TATCTTTGCC GTGCCCCTCC TCTCCTTTCA CTTCATCTCC
ACGAACAACC CCTACGCCAT GAACTTCCGC TTCATTGCTG CCGACACTCT CCAGAAAATA ATGATGCTCT TTGCCCTGAC
TCTCTGGACC AACCTCACCA AAACTGGCTC GCTGGAGTGG ATGATCACCA TCTTCTCCCT CTCAACGCTC CCCAACACGC
TCGTCATGGG CATCCCCCTC CTCATCGCCA TGTACGGTGA CTACTCCGGC TCCCTCATGG TTCAGGTAGT CGTGCTCCAG
TGCATCATTT GGTACACCCT CCTCCTCTTC CTCTTCGAAT ACCGCGCTGC CAAAATCCTC ATCATGGAGC AATTCCCTGA
AACTGCTGCC TCCATTGTCT CCTTCAAGGT CGACTCAGAC GTCGTTTCGC TTGACGGACG GGACTTTCTC GAAACAGACG
CGGAGGTCGG CGACGACGGC AAGCTCCACG TCACCGTGAG GAAATCCAAC GCTTCCCGAC GGTCCTTCAT GATGACGCCG
CGGCCCTCCA ACCTCACCGG CGCTGAGATT TACAGCCTCA GCTCCTCGCG TAACCCCACG CCACGTGGTT CCAACTTCAA
CCACGCGGAT TTCTTCTCCA TGATGGGGTA CCAACCACGC CACTCCAATT TCACCGCCAA TGATTTGTTC TCTTCCCGTG
GACCCACTCC ACGACCTTCC AATTTCGAAG AAACCTCCAC GCCTCAGCCC GTCACAGTCG CTTCTCCCCG CTTTGGGTTT
TACCCAACTC AGACCGTGCC GGCTGCGTAC CCGCCTCCCA ACCCGGAGTT CTCTTCTGCT CCTACTAAAC CCACAACAGT
TACCAAGAAC CAGAACCAGC AGAATCTCAC TAAGGGTGCC CACGATGCGA AAGAGCTTCA CATGTTCGTA TGGAGCTCCA
GCGCGTCGCC GGTGTCGGAA AATGCGGGGC TGAACGTGTT CGGGAACACC GACCTTGGAA GCTCCGAACA ACCCGACCAG
GGTGCCAAGG AGATCAGGAT GTTGGTGGCT GATAATGCCC ACGTACAAAA TGGGGAAGCA AACATCACAG GTGGTTTGGA
GGCCGAACTT GGCGGAGAAG AGTTCAAGTT TCCGGTGAAC GGGGGAGAAC AGGTGGAAGA AGAGAAAGAT AAAGAGAGAG
AAAAGGAGGG GCTGAATGGG CTGAACAAGT TGGGGTCAAG CTCTACGGAA GAGCTCCACC CGAAAGTTGG CAGAGCCGGC
GAGCTTTCCG GTGGCGGAAA ACACATGCCT CCTGCGAGTG TGATGACTCG TCTCATTTTG ATAATGGTGT GGAGGAAGCT
TATCCGCAAC CCCAACACGT ACTCCAGCCT CATTGGTGTG GTATGGTCCC TCATTGCCTT CAGGTGGCAC GTGCACATGC
CCAAAATAAT AGAGAAATCA ATTTCTATAC TGTCTGATGC CGGTCTTGGA ATGGCAATGT TCAGCTTAGG TCTGTTTATG
GCACTTCAAC CAAAGATAAT TGCATGTGGA AACTCTGTGG CTACATTTGC TATGGCTATT AGATTCCTGA CTGGTCCAGC
CGTGATGGCT GCAGCTTCCA TAGCAGTTGG CCTCCGTGGC ACTCTCCTAC ACGTAGCAAT TGTTCAGGCT GCACTTCCTC
AAGGAATTGT TCCATTTGTG TTTGCTAAGG AGTACAACGT TCATCCAGCC ATTCTTAGCA CGGCGGTTAT ATTTGGGATG
TTGATAGCAC TTCCTATTAC TCTTGTCTAC TACATTGTTC TTGGTTTATG ATATTTCTAT GCTACAGTAA CCAAGATTGA
AGGAAAAAAA AAACATGCAA GTGAATGTCA ACCTTTTGAT ATTTTTGAAA TTGGAGGAAC CTCTCACTAA CTGGTAATTT
CACAACAAAA GGATGCGATT CAAAGTTTTC AAGAGATTGG AAAATTGAGA AAGTATGAGA GTTTGGGAGT TCATGATGAT
GATTCATTTT GAAGAACCTC AAAGAGGAAG GAATAATAGA GACATAACAG AGGAAATAGA GTTAGTAAGT CAATGATAAC
TATAAATGGT TCCTTATTTA TCACCAGTTT TTGTAAATTT TATGAGAAAA TCCCGTTTGA ATCATCAAAT TAAGAACATG
GTCTAGTGAG TGAGTAGAGG AAACCAAATT AATCAGATGA GATGAGCCTC AGGAAGTCTT TCATTTCATT TTATTTTGCT
GTTCTTTTTC ATTTTTCATT ATTGATATTA TTATCATTAT ATATTCAGTA GAAATAAACT AAC

>Vigan.10G031400.01
ATGATAACAT GGAAAGACCT GTACACGGTG CTCACGGCAG TGGTGCCTCT GTATGTGGCC ATGATCCTGG CTTACGGTTC
CGTGCGGTGG TGGAAGATAT TCTCGCCGGA CCAGTGCTCC GGCATAAACC GCTTTGTGGC TATCTTTGCC GTGCCCCTCC
TCTCCTTTCA CTTCATCTCC ACGAACAACC CCTACGCCAT GAACTTCCGC TTCATTGCTG CCGACACTCT CCAGAAAATA
ATGATGCTCT TTGCCCTGAC TCTCTGGACC AACCTCACCA AAACTGGCTC GCTGGAGTGG ATGATCACCA TCTTCTCCCT
CTCAACGCTC CCCAACACGC TCGTCATGGG CATCCCCCTC CTCATCGCCA TGTACGGTGA CTACTCCGGC TCCCTCATGG
TTCAGGTAGT CGTGCTCCAG TGCATCATTT GGTACACCCT CCTCCTCTTC CTCTTCGAAT ACCGCGCTGC CAAAATCCTC
ATCATGGAGC AATTCCCTGA AACTGCTGCC TCCATTGTCT CCTTCAAGGT CGACTCAGAC GTCGTTTCGC TTGACGGACG
GGACTTTCTC GAAACAGACG CGGAGGTCGG CGACGACGGC AAGCTCCACG TCACCGTGAG GAAATCCAAC GCTTCCCGAC
GGTCCTTCAT GATGACGCCG CGGCCCTCCA ACCTCACCGG CGCTGAGATT TACAGCCTCA GCTCCTCGCG TAACCCCACG
CCACGTGGTT CCAACTTCAA CCACGCGGAT TTCTTCTCCA TGATGGGGTA CCAACCACGC CACTCCAATT TCACCGCCAA
TGATTTGTTC TCTTCCCGTG GACCCACTCC ACGACCTTCC AATTTCGAAG AAACCTCCAC GCCTCAGCCC GTCACAGTCG
CTTCTCCCCG CTTTGGGTTT TACCCAACTC AGACCGTGCC GGCTGCGTAC CCGCCTCCCA ACCCGGAGTT CTCTTCTGCT
CCTACTAAAC CCACAACAGT TACCAAGAAC CAGAACCAGC AGAATCTCAC TAAGGGTGCC CACGATGCGA AAGAGCTTCA
CATGTTCGTA TGGAGCTCCA GCGCGTCGCC GGTGTCGGAA AATGCGGGGC TGAACGTGTT CGGGAACACC GACCTTGGAA
GCTCCGAACA ACCCGACCAG GGTGCCAAGG AGATCAGGAT GTTGGTGGCT GATAATGCCC ACGTACAAAA TGGGGAAGCA
AACATCACAG GTGGTTTGGA GGCCGAACTT GGCGGAGAAG AGTTCAAGTT TCCGGTGAAC GGGGGAGAAC AGGTGGAAGA
AGAGAAAGAT AAAGAGAGAG AAAAGGAGGG GCTGAATGGG CTGAACAAGT TGGGGTCAAG CTCTACGGAA GAGCTCCACC
CGAAAGTTGG CAGAGCCGGC GAGCTTTCCG GTGGCGGAAA ACACATGCCT CCTGCGAGTG TGATGACTCG TCTCATTTTG
ATAATGGTGT GGAGGAAGCT TATCCGCAAC CCCAACACGT ACTCCAGCCT CATTGGTGTG GTATGGTCCC TCATTGCCTT
CAGGTGGCAC GTGCACATGC CCAAAATAAT AGAGAAATCA ATTTCTATAC TGTCTGATGC CGGTCTTGGA ATGGCAATGT
TCAGCTTAGG TCTGTTTATG GCACTTCAAC CAAAGATAAT TGCATGTGGA AACTCTGTGG CTACATTTGC TATGGCTATT
AGATTCCTGA CTGGTCCAGC CGTGATGGCT GCAGCTTCCA TAGCAGTTGG CCTCCGTGGC ACTCTCCTAC ACGTAGCAAT
TGTTCAGGCT GCACTTCCTC AAGGAATTGT TCCATTTGTG TTTGCTAAGG AGTACAACGT TCATCCAGCC ATTCTTAGCA
CGGCGGTTAT ATTTGGGATG TTGATAGCAC TTCCTATTAC TCTTGTCTAC TACATTGTTC TTGGTTTATG A

>Vigan.10G031400.01
MITWKDLYTV LTAVVPLYVA MILAYGSVRW WKIFSPDQCS GINRFVAIFA VPLLSFHFIS TNNPYAMNFR FIAADTLQKI
MMLFALTLWT NLTKTGSLEW MITIFSLSTL PNTLVMGIPL LIAMYGDYSG SLMVQVVVLQ CIIWYTLLLF LFEYRAAKIL
IMEQFPETAA SIVSFKVDSD VVSLDGRDFL ETDAEVGDDG KLHVTVRKSN ASRRSFMMTP RPSNLTGAEI YSLSSSRNPT
PRGSNFNHAD FFSMMGYQPR HSNFTANDLF SSRGPTPRPS NFEETSTPQP VTVASPRFGF YPTQTVPAAY PPPNPEFSSA
PTKPTTVTKN QNQQNLTKGA HDAKELHMFV WSSSASPVSE NAGLNVFGNT DLGSSEQPDQ GAKEIRMLVA DNAHVQNGEA
NITGGLEAEL GGEEFKFPVN GGEQVEEEKD KEREKEGLNG LNKLGSSSTE ELHPKVGRAG ELSGGGKHMP PASVMTRLIL
IMVWRKLIRN PNTYSSLIGV VWSLIAFRWH VHMPKIIEKS ISILSDAGLG MAMFSLGLFM ALQPKIIACG NSVATFAMAI
RFLTGPAVMA AASIAVGLRG TLLHVAIVQA ALPQGIVPFV FAKEYNVHPA ILSTAVIFGM LIALPITLVY YIVLGL*