GBrowse Details

Vigan.10G042200.01

Basic Information:
Name: Vigan.10G042200.01
Multiple alignment
Variant Information
Position: Chr10:4217837..4221301 (+ strand)
Length: 3465
Functional Information:
Description: Similar to CASP-like protein 1. [C6T1G0, Glycine max]
InterPro: Uncharacterised protein family UPF0497, trans-membrane plant subgroup (IPR006459)
Uncharacterised protein family UPF0497, trans-membrane plant (IPR006702)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.00,0.07,0.70,5.58,0.26,19.75,0.03
Arabidopsis thaliana homolog: AT5G15290.1
Automatic updates:
Name: NM_001249719 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max CASP-like protein 1 (LOC100500346), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:4217837..4217940 (+ strand)
Length: 104
Type: five_prime_UTR
Position: Chr10:4217941..4218161 (+ strand)
Length: 221
Type: CDS
Position: Chr10:4218688..4218811 (+ strand)
Length: 124
Type: CDS
Position: Chr10:4219837..4220052 (+ strand)
Length: 216
Type: CDS
Position: Chr10:4220053..4221301 (+ strand)
Length: 1249
Type: three_prime_UTR


>Vigan.10G042200.01
ATTTGACATG GCTGTTCAAC ACCTATATAA ATGCATGTTT TGGATACCTA TAGTTAAATA AGAAGTGTGT GTGCTAAGAG
AGAAAACATT AAATTGGAAG AGAAATGAAG GGAAGTTCAA TTGAAGTTGG AGAAGCCATG AAGGGTGCAT CCCCAAGAAA
AGGGGTGACA AGAGGGTTAT CTATAATGGA CTTTGTTTTG AGAATTATTG CAGCTGTTGC AACCCTAGGT GCTGCATTGG
CCATGGCAAC TACCAATGAG ACCCTTCCAT TTGCCACTCA ATTCATCAAA TTCAGAGCTC AATTTGATGA CCTTCCCTCA
CTTGTGTTTT TTGTGATGGG CAACTCTGTT GTTTGTGGCT ATCTTGTGCT TTCACTTGTT CTATCTATCT TCCACATAGT
GAGGAGCACT GCAGTGAAAA GTAGGATTCT CCTTGTTGCT TTTGACACGG TAATGTTGGG TCTGATCACA GCCGCAGCCT
CTGCAGCAAC ATCGATAGTG TACATAGCAC ACAATGGAAA CACAGGTGCC AATTGGTTTG CAATCTGCCA ACAATACAAC
AACTTCTGCG AACGCATTTC GGGTTCTCTC ATTGGCTCTT ACATTGCTGT TGCTCTCTTC ACAATACTAA TCATCCTATC
AGTTGTTGCA ATCTCTCGAA ACTGATGTTC TATGCCCTTT TCTTCATATA ACTTAGTTTG AAGGAAAGAA AACAAAAACT
GTCTTCATGA ACATTTTTCT AGTGTGCATT TGTGGTTTGT AATCCAAGTG TGAAAATGTT GTTGAATTGT GGTTTCTGGG
TGTAATCGAT GAGTAACAGC AGAGCATGAT TACATTGAAC CTTTGTGTTA AATTTGAAAT ACTTGCAAGT TGCACATTCT
AATGAAACAT GTACATAAAA TATATATATA TATATTAAAA AAGAAGAAAA AAAAGAGTAA CAAGAGGTTT TATACCACAA
AAATTAGAAT TCCGAATACT GATATACCCT GCAGCTTCCT CCTTGTGCTA TGTTAGTATG GCCACAAGTT CATCTATTGA
CTTCAATGTC TTCTCGTAGT ATAGGTACGA TTCATACACC TTTGGCGTTC TAATATACCG ATCAAACTGA ACAAAATGAA
AACCAAAAAC ATTAAAAGTG ACACAGTCCT TTAACTGATT AGCAGTGACA GAGACAGTAG TAATAAGAGT GTACCTCTTC
AAAGTTGGAG ATCAACTCAT TAGCAGTTCT GACATAGTCC TTGCGACGAT TCTGAGGTAA GGTAGAGAAA GCAGTTCTCA
AATCCTGGTC AAGGTAGGCC TGTTTGATGC GTATGTAGAA CATGATATAC CTCCAAGACA GAGTCTCCAG AGGCTCCCTC
ATGTCGTGGA GCCCTTCGGC GGTTTGTTTT ATGCGGGCCA CCGCGTCTTC CGGGGAAAGC CCGGGCCCGA AGAAGTGCTC
CCAGATGAAG GAGCGGGTGC CCCAGTTCTG GGCCAGGGCT TGTTGGGTGC TGCCATGCAC TGCTACTACA GCTGTGGAAG
TGGCGAGGAA TGTGGAGATG AGGTTCCTTC TGTTGGGGCC TGTGTGGGGG AGAGGGGTGG AGGTGGCGGC GGTGGTGGTG
GTGGCGGTGG AGGAGGGCTT TTTGTGGTGG GTTTTGAGGT GGGCGTGGAG GAGTGTGGTG GCGTGAGTGA AGCTGGACAT
GGTTTGTGTT TGGATAACGT GATTTGGGGA CGTAGGTGGT GTTTGAGGGA GTGAGGTTTG AGTGGTGGGA AGGGAAATTT
TGGAATCTGA GGCTTCGGGC AGGGGGTAGG CTGACCCTTC TGACCGTGCT GACCGCTCTA AGAGCTTGAT GGTTTGATGT
ACATGATGCG CATGTGGAAT ATTTATCTTC CTGAGATTTG GAACATGTAC ATGTTTCATT TTTCTTAATT TCGC

>Vigan.10G042200.01
ATGAAGGGAA GTTCAATTGA AGTTGGAGAA GCCATGAAGG GTGCATCCCC AAGAAAAGGG GTGACAAGAG GGTTATCTAT
AATGGACTTT GTTTTGAGAA TTATTGCAGC TGTTGCAACC CTAGGTGCTG CATTGGCCAT GGCAACTACC AATGAGACCC
TTCCATTTGC CACTCAATTC ATCAAATTCA GAGCTCAATT TGATGACCTT CCCTCACTTG TGTTTTTTGT GATGGGCAAC
TCTGTTGTTT GTGGCTATCT TGTGCTTTCA CTTGTTCTAT CTATCTTCCA CATAGTGAGG AGCACTGCAG TGAAAAGTAG
GATTCTCCTT GTTGCTTTTG ACACGGTAAT GTTGGGTCTG ATCACAGCCG CAGCCTCTGC AGCAACATCG ATAGTGTACA
TAGCACACAA TGGAAACACA GGTGCCAATT GGTTTGCAAT CTGCCAACAA TACAACAACT TCTGCGAACG CATTTCGGGT
TCTCTCATTG GCTCTTACAT TGCTGTTGCT CTCTTCACAA TACTAATCAT CCTATCAGTT GTTGCAATCT CTCGAAACTG
A

>Vigan.10G042200.01
MKGSSIEVGE AMKGASPRKG VTRGLSIMDF VLRIIAAVAT LGAALAMATT NETLPFATQF IKFRAQFDDL PSLVFFVMGN
SVVCGYLVLS LVLSIFHIVR STAVKSRILL VAFDTVMLGL ITAAASAATS IVYIAHNGNT GANWFAICQQ YNNFCERISG
SLIGSYIAVA LFTILIILSV VAISRN*