GBrowse Details

Vigan.10G043800.01

Basic Information:
Name: Vigan.10G043800.01
Multiple alignment
Variant Information
Position: Chr10:4392253..4403190 (- strand)
Length: 10938
Functional Information:
Description: Similar to multiple myeloma tumor-associated protein 2 homolog. [XP_003518743.1, Glycine max]
InterPro: Kinase phosphorylation domain (IPR019315)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:52.32,27.17,21.58,31.85,23.54,29.69,23.81,25.38
Arabidopsis thaliana homolog: AT3G52220.1
Automatic updates:
Name: NM_001251052 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306639 (LOC100306639), mRNA.
PubMed ID: 18927222 NCBI(pubmed)
Status: Known Variant
Name: NM_001317597 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max glycine-rich Kinase phosphorylation domain-containing protein (LOC100787874), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:4392253..4392732 (- strand)
Length: 480
Type: three_prime_UTR
Position: Chr10:4392733..4393045 (- strand)
Length: 313
Type: CDS
Position: Chr10:4400785..4401052 (- strand)
Length: 268
Type: CDS
Position: Chr10:4402576..4402665 (- strand)
Length: 90
Type: CDS
Position: Chr10:4402997..4403039 (- strand)
Length: 43
Type: CDS
Position: Chr10:4403040..4403190 (- strand)
Length: 151
Type: five_prime_UTR


>Vigan.10G043800.01
GAAAAACTAA AACTCCTCAA TATACAAGCC AAACAAGCCC TCACTTTGTG TGAACGTGCT TTAAAAGTTA TTCTGTCATT
GCTTAGATTA TAGATGCAAG GCATATAATT TATCACAGAG GAAGGAGAGA ATTGTGTGTT TAGGCCTAGA CATGTATCAT
CCAACCAGAG GTGGCGTTCG TGGCGGTCGA GATCAGTTCA CTTGGGACGA TGTGAAAGTT GATAAGCATA GGGAGAACTA
CCTCGGTCAC AGTATCAAGG CTCCTGTTGG AAGATGGCAG AAAGGGAAAG ATCTTTTCTG GTATGCCAGG GATAAAAAGT
CCCAAAATGC AGAAATGGAA GCTGCAAAAG AAGAGATAAA AAGAATTAAG GAAGAAGAGG AGCAGGCAAT GAGGGAAGCA
CTTGGCTTAG CTCCCAAGCG TGCTAACCGT CCTCAAGGTA ATCGTTTAGA TAAACACGAG TTTTCAGAAC TGGTAAAGCG
AGGGTCTACA GCAGAGGACT TAGGTGCAGG TCATGCTGAA GCAGCAAGGG TCCAAGGTCT TGGTTTTTCA AGAGAACCAC
GCCCTTGGGA GGAACCTGGT TCTTCAAAGC TTTCAGTGGA TGATGCACCA GCTGAGGTGG AAAATGTGTC TATTCCAGAT
CAACCTGCAA CGAAGACTGA AGATGCTTCA GAAGATGAAA ATAGAAGAAA GAGAAGACGA GAGGAGAGGA AGCAGGAGAA
ACATGAAAAG CGTGAGAAGA AGCATTCTCG GGAGGATAGG AAGCAAGAGA AACGTGAGAA ACATGAGAAG CGGTATTCTC
GTGATTCAGA TGACAGGAAG AGGCACAAGA AAGACAAGGA GAGGAGGAGA CATGATTCAG ATTGAATTTC ATCTGGGGGT
GTGTGTGTTG TCATCTTCTA TGTGAATTAG CATGTTTATT TCTAGTTCCA TGAATATGGA TGGTGTATCT TGGTAATTGG
TTCCTAATGG CCTGCATGTT GGCACTGACA ATCAGGCATT CGTTAAATTT GGAATTTGTG ATCAAGGGAA ATGAAGCCAG
TCACTTGTGT TTGTATTATA TCACGAGTTC TCGCCTAGCC TTTCTCTTCC CTCTTAGAGC CAAGAACAAT GTTTCTATCA
TCTCTCTAGA GATGCAAGTG TGCTCTATTC TTGGGAGAGA GAAATCTTTG TTTTCTTTAC TCTTTTGTAC GCTTCTGATT
TAGCTTTCAT GAAAGGTTAT GTTCTCTTTA TGTGAAAGTA TAGGTTTTGC TTCCTTTGGA ACCCTTATTG CACACCTGTT
TGTTGCCTTT TTAGTCCTAT CAGGTTCACG TTTGGGTATT TTATCCCAAC AAAAAATGAC ACAAG

>Vigan.10G043800.01
ATGTATCATC CAACCAGAGG TGGCGTTCGT GGCGGTCGAG ATCAGTTCAC TTGGGACGAT GTGAAAGTTG ATAAGCATAG
GGAGAACTAC CTCGGTCACA GTATCAAGGC TCCTGTTGGA AGATGGCAGA AAGGGAAAGA TCTTTTCTGG TATGCCAGGG
ATAAAAAGTC CCAAAATGCA GAAATGGAAG CTGCAAAAGA AGAGATAAAA AGAATTAAGG AAGAAGAGGA GCAGGCAATG
AGGGAAGCAC TTGGCTTAGC TCCCAAGCGT GCTAACCGTC CTCAAGGTAA TCGTTTAGAT AAACACGAGT TTTCAGAACT
GGTAAAGCGA GGGTCTACAG CAGAGGACTT AGGTGCAGGT CATGCTGAAG CAGCAAGGGT CCAAGGTCTT GGTTTTTCAA
GAGAACCACG CCCTTGGGAG GAACCTGGTT CTTCAAAGCT TTCAGTGGAT GATGCACCAG CTGAGGTGGA AAATGTGTCT
ATTCCAGATC AACCTGCAAC GAAGACTGAA GATGCTTCAG AAGATGAAAA TAGAAGAAAG AGAAGACGAG AGGAGAGGAA
GCAGGAGAAA CATGAAAAGC GTGAGAAGAA GCATTCTCGG GAGGATAGGA AGCAAGAGAA ACGTGAGAAA CATGAGAAGC
GGTATTCTCG TGATTCAGAT GACAGGAAGA GGCACAAGAA AGACAAGGAG AGGAGGAGAC ATGATTCAGA TTGA

>Vigan.10G043800.01
MYHPTRGGVR GGRDQFTWDD VKVDKHRENY LGHSIKAPVG RWQKGKDLFW YARDKKSQNA EMEAAKEEIK RIKEEEEQAM
REALGLAPKR ANRPQGNRLD KHEFSELVKR GSTAEDLGAG HAEAARVQGL GFSREPRPWE EPGSSKLSVD DAPAEVENVS
IPDQPATKTE DASEDENRRK RRREERKQEK HEKREKKHSR EDRKQEKREK HEKRYSRDSD DRKRHKKDKE RRRHDSD*