GBrowse Details

Vigan.10G044500.01

Basic Information:
Name: Vigan.10G044500.01
Multiple alignment
Variant Information
Position: Chr10:4434370..4439697 (- strand)
Length: 5328
Functional Information:
Description: Similar to Vesicle transport v-SNARE. [G7JWJ8, Medicago truncatula]
GO: Biological Process: intracellular protein transport (GO:0006886)
Biological Process: vesicle-mediated transport (GO:0016192)
Cellular Component: membrane (GO:0016020)
Molecular Function: protein binding (GO:0005515)
InterPro: Target SNARE coiled-coil domain (IPR000727)
Vesicle transport v-SNARE, N-terminal (IPR007705)
t-SNARE (IPR010989)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:89.36,47.42,14.72,20.06,23.86,22.98,44.21,19.26
Arabidopsis thaliana homolog: AT1G26670.1
Automatic updates:
Name: NM_001248595 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500007 (LOC100500007), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001251190 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527319 (LOC100527319), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:4434370..4434750 (- strand)
Length: 381
Type: three_prime_UTR
Position: Chr10:4434751..4434903 (- strand)
Length: 153
Type: CDS
Position: Chr10:4435149..4435319 (- strand)
Length: 171
Type: CDS
Position: Chr10:4438455..4438643 (- strand)
Length: 189
Type: CDS
Position: Chr10:4438745..4438803 (- strand)
Length: 59
Type: CDS
Position: Chr10:4439475..4439571 (- strand)
Length: 97
Type: CDS
Position: Chr10:4439572..4439697 (- strand)
Length: 126
Type: five_prime_UTR


>Vigan.10G044500.01
ACCCTTTCCC ATTCAAATTA GGGTAAAATT GAATCATCCA TCACTTTGCA TTCATGCAGT TTCTATTTTT GTTTTCCAAT
TTTCAATTTT AATTTCTTCA TCTTTTCGAT CAAAGGGTGT GGCAAGATGA GTGAGGTTTT CGAAGGGTAC GAGCGCCAGT
ACTGTGAGCT CTCTGCTAAT CTCTCCCGCA AATGTAGTTC AACCTCGCTT GTTTCTGATC AAGAACAGAA GCTGCAGAAG
TTTTCTGAGA TCAAAGCAGG ACTGGATGAC GCTGATGTCC TGATTCGGAA AATGGACCTT GAGGCAAGAA GTTTGCAGCC
AAGCGCAAAG GCAATGCTTC TTGCAAAGTT GAGGGAGTAC AAATCTGATC TAAGCAACTT GAAAAAGGAA TTTAAAAGGC
TAACATCACC TAATTCTGAT GAGGCTGCCC GTGAAGAATT GTTGGAGGCT GGCATAGCAG ATACTCATTC GGCTTCTGCT
GATCAGAGAG AAAGATTAAC TATGTCTGTG GAGAGATTAA ACCACTCCAG TGAGAGAATA AGGGAGAGCC ATAGAACCTT
ACTGGAGACT GAAGAACTTG GTGTTTCCAT CCTCCAGGAT TTGCACAGTC AGCGAGAGAC TCTATTGAAC TCCCATAAAA
GGCTTCATGG GGTAGATGAT GCTATTGACA AGAGTAAGAA GGTTTTAACT ACCATGTCAC GGAGAATAAC TAGGAACAAA
TGGATCGTTG CATCTGTGAT TGGAGCTCTT GTTTTTGCTA TAGTTGTTAT TCTTTTTTAC AAGCTATCTC ATTAGCTTAT
AAAATCATAA AAGATATGAC AGAATGGAAG CAATGTTTAA TGCTTTTCTG TACTTGGTTG TATATAGGAA ATGTATGGAC
ATAGGTGGCG TTATCATATA TCCCTGCAAT TATTTCGCCT CTGTTATTTT TAAGATTGGA AAGTTTTCAA TGATATACCT
TGCTTTTTAT GCTCTTAATT ATGTTTTTCT TTTGAACTGT AAGAACAATT ACTTAATGCA AGTAAGTCTG TTCGAGTATA
CTCTTTTTAT GACATGATGT ATTTGTAGTA GCATATCTGA AGTTCATGAT TTCCAAATCT TTGTGCTAAT GCCGTGTGCG
AGTGCCTTGT TCATTGCCTT AGCTGAAGTG TTTACCTGAA AAGAAACTTT TTGCGG

>Vigan.10G044500.01
ATGAGTGAGG TTTTCGAAGG GTACGAGCGC CAGTACTGTG AGCTCTCTGC TAATCTCTCC CGCAAATGTA GTTCAACCTC
GCTTGTTTCT GATCAAGAAC AGAAGCTGCA GAAGTTTTCT GAGATCAAAG CAGGACTGGA TGACGCTGAT GTCCTGATTC
GGAAAATGGA CCTTGAGGCA AGAAGTTTGC AGCCAAGCGC AAAGGCAATG CTTCTTGCAA AGTTGAGGGA GTACAAATCT
GATCTAAGCA ACTTGAAAAA GGAATTTAAA AGGCTAACAT CACCTAATTC TGATGAGGCT GCCCGTGAAG AATTGTTGGA
GGCTGGCATA GCAGATACTC ATTCGGCTTC TGCTGATCAG AGAGAAAGAT TAACTATGTC TGTGGAGAGA TTAAACCACT
CCAGTGAGAG AATAAGGGAG AGCCATAGAA CCTTACTGGA GACTGAAGAA CTTGGTGTTT CCATCCTCCA GGATTTGCAC
AGTCAGCGAG AGACTCTATT GAACTCCCAT AAAAGGCTTC ATGGGGTAGA TGATGCTATT GACAAGAGTA AGAAGGTTTT
AACTACCATG TCACGGAGAA TAACTAGGAA CAAATGGATC GTTGCATCTG TGATTGGAGC TCTTGTTTTT GCTATAGTTG
TTATTCTTTT TTACAAGCTA TCTCATTAG

>Vigan.10G044500.01
MSEVFEGYER QYCELSANLS RKCSSTSLVS DQEQKLQKFS EIKAGLDDAD VLIRKMDLEA RSLQPSAKAM LLAKLREYKS
DLSNLKKEFK RLTSPNSDEA AREELLEAGI ADTHSASADQ RERLTMSVER LNHSSERIRE SHRTLLETEE LGVSILQDLH
SQRETLLNSH KRLHGVDDAI DKSKKVLTTM SRRITRNKWI VASVIGALVF AIVVILFYKL SH*