GBrowse Details

Vigan.10G045700.01

Basic Information:
Name: Vigan.10G045700.01
Multiple alignment
Variant Information
Position: Chr10:4589357..4595509 (+ strand)
Length: 6153
Functional Information:
Description: Similar to Glutamate 5-kinase. [G7JWN1, Medicago truncatula]
InterPro: Aspartate/glutamate/uridylate kinase (IPR001048)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:19.52,22.09,12.20,18.79,7.80,24.07,18.63,12.75
Arabidopsis thaliana homolog: AT1G26640.1
Automatic updates:
Name: NM_001255484 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100792453 (LOC100792453), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:4589357..4589477 (+ strand)
Length: 121
Type: five_prime_UTR
Position: Chr10:4589478..4589565 (+ strand)
Length: 88
Type: CDS
Position: Chr10:4589861..4590085 (+ strand)
Length: 225
Type: CDS
Position: Chr10:4590755..4590852 (+ strand)
Length: 98
Type: CDS
Position: Chr10:4591755..4591797 (+ strand)
Length: 43
Type: CDS
Position: Chr10:4592891..4592952 (+ strand)
Length: 62
Type: CDS
Position: Chr10:4593081..4593137 (+ strand)
Length: 57
Type: CDS
Position: Chr10:4593869..4593904 (+ strand)
Length: 36
Type: CDS
Position: Chr10:4593985..4594062 (+ strand)
Length: 78
Type: CDS
Position: Chr10:4594392..4594458 (+ strand)
Length: 67
Type: CDS
Position: Chr10:4594547..4594600 (+ strand)
Length: 54
Type: CDS
Position: Chr10:4594833..4594936 (+ strand)
Length: 104
Type: CDS
Position: Chr10:4595014..4595109 (+ strand)
Length: 96
Type: CDS
Position: Chr10:4595110..4595509 (+ strand)
Length: 400
Type: three_prime_UTR


>Vigan.10G045700.01
TAAAAGTAAA AAACTAAAAT TGAAGTTAAA CCATGAAAAG ATAGTTAACT TGTGGACAGA TTCCACGACA TTAAACATCT
TTGATCGGTG AAGTAGGCGT GTGGAGAATC GGAGAAGGGG AATGGAGAAG AACAAGAATC AGAGCCAAAC ACTCACTTCC
TCACCCCTTT CTCCTTTCAC TCCATCAATC CGTTGCATAG TCAAACTCGG AGGAGCTGCG GTTACTTGCA AAGATGAATT
GGAGATGATA AATGAGGAGG TTCTTCAGAA GGTTTCAGAA CAGCTGAGGC AAGCTATGAT TGCATCTTCT GAGAAGCCTC
CCGGGATGGA TTGGAGCAAG AGACCTGGAG GGTCAGAAAT CTGTTGCAAT CCGGAAGAAT TTGGAGATCA TTCTGCTATG
GAATGTAGCC CTTTCATTGT GGTTCATGGA GCAGGTTCTT TTGGGCACTT CCAAGCTAGC AAATCTGGTG TCCACAAGGG
GCAGTTGAAT AAACCTCTTG TCAAAGGAGG CTTTGTTGCT ACCCGAATAT CTGTAACCAC TCTTAATCTG GAAATTGTTA
GAGCACTAGC CAGAGAGGGA ATTCCTTCAA TTGGAATGTC ACCTTTCTCA TGTGGATGGT TAACCAGTGA GAGACATATA
TCTTCAGCTG ATTTATCTTC AGTGGCTAAG GCAATTGATT CTGGTTTTAC ACCTGTTCTG CACGGAGATG CAGTGCTTGA
TGAGATTCAG GGATGCACTA TTTTGAGTGG AGATGTTATC ATAAGTCATC TGGCAGCGTA CTCAAAACCT AAATATGTTG
TTTTTCTAAC AGATGTATAT GGGGTATATG ATCGCCCTCC AACAGAACCT GATGCAATAC TCTTAAAGGA GATTGCTGTT
GCTGACGATG GAAGCTGGTC AGTTGTAAAA CCGAAGTTGC AGAACTCAAT TGAACTGACA GTTGCTGCTC ATGATACAAC
TGGTGGGATG AAAACAAAGA TATCAGAAGC TGCAATGATA GCAAAACACG GAATTGATGT CTACATTGTT AAGGCAGCTA
CAAGCCACTC ACTAAGGGCC TTAAATGGAG ATCTGAGAAG CAGCATCCCT GATGACTGGC TTGGGACTGT TGTTCGGTCC
TTGAGATAAA TCTGCCTGAC AAAATCTTTT GCATAGTTCT CAACCATCAA CAACATGAAG TTGTAACTTT TGGCCGCGTC
ATGAATATGA GTTGTATATC TAAATAATAC AACTTCCAAA TCATGTGTCA AATGCTGAAT GAATGAATTA CTGATAATCA
TTTGAAACTT TTCATTTTAT CCTAAACTCT TCCATTATGT GCTGTCAAGA TTAGCTACAT GAATTACTTG ATGTCAGTAG
ACTTGATTAT AAACCAAATT TTCAAGGAAA TACAGTGTTT CTGTAAAATT GTTGAGTAGC TTATGTTGCT TATGCAAGTT
GTGTCTGGCT ACATCAATGT TTTTAAGTGC TTCCCTTGTA TGAGTTGCAA CACTTCATTC CCAAATACAT TGAAACAAAT
TAACATATT

>Vigan.10G045700.01
ATGGAGAAGA ACAAGAATCA GAGCCAAACA CTCACTTCCT CACCCCTTTC TCCTTTCACT CCATCAATCC GTTGCATAGT
CAAACTCGGA GGAGCTGCGG TTACTTGCAA AGATGAATTG GAGATGATAA ATGAGGAGGT TCTTCAGAAG GTTTCAGAAC
AGCTGAGGCA AGCTATGATT GCATCTTCTG AGAAGCCTCC CGGGATGGAT TGGAGCAAGA GACCTGGAGG GTCAGAAATC
TGTTGCAATC CGGAAGAATT TGGAGATCAT TCTGCTATGG AATGTAGCCC TTTCATTGTG GTTCATGGAG CAGGTTCTTT
TGGGCACTTC CAAGCTAGCA AATCTGGTGT CCACAAGGGG CAGTTGAATA AACCTCTTGT CAAAGGAGGC TTTGTTGCTA
CCCGAATATC TGTAACCACT CTTAATCTGG AAATTGTTAG AGCACTAGCC AGAGAGGGAA TTCCTTCAAT TGGAATGTCA
CCTTTCTCAT GTGGATGGTT AACCAGTGAG AGACATATAT CTTCAGCTGA TTTATCTTCA GTGGCTAAGG CAATTGATTC
TGGTTTTACA CCTGTTCTGC ACGGAGATGC AGTGCTTGAT GAGATTCAGG GATGCACTAT TTTGAGTGGA GATGTTATCA
TAAGTCATCT GGCAGCGTAC TCAAAACCTA AATATGTTGT TTTTCTAACA GATGTATATG GGGTATATGA TCGCCCTCCA
ACAGAACCTG ATGCAATACT CTTAAAGGAG ATTGCTGTTG CTGACGATGG AAGCTGGTCA GTTGTAAAAC CGAAGTTGCA
GAACTCAATT GAACTGACAG TTGCTGCTCA TGATACAACT GGTGGGATGA AAACAAAGAT ATCAGAAGCT GCAATGATAG
CAAAACACGG AATTGATGTC TACATTGTTA AGGCAGCTAC AAGCCACTCA CTAAGGGCCT TAAATGGAGA TCTGAGAAGC
AGCATCCCTG ATGACTGGCT TGGGACTGTT GTTCGGTCCT TGAGATAA

>Vigan.10G045700.01
MEKNKNQSQT LTSSPLSPFT PSIRCIVKLG GAAVTCKDEL EMINEEVLQK VSEQLRQAMI ASSEKPPGMD WSKRPGGSEI
CCNPEEFGDH SAMECSPFIV VHGAGSFGHF QASKSGVHKG QLNKPLVKGG FVATRISVTT LNLEIVRALA REGIPSIGMS
PFSCGWLTSE RHISSADLSS VAKAIDSGFT PVLHGDAVLD EIQGCTILSG DVIISHLAAY SKPKYVVFLT DVYGVYDRPP
TEPDAILLKE IAVADDGSWS VVKPKLQNSI ELTVAAHDTT GGMKTKISEA AMIAKHGIDV YIVKAATSHS LRALNGDLRS
SIPDDWLGTV VRSLR*