GBrowse Details

Vigan.10G046300.01

Basic Information:
Name: Vigan.10G046300.01
Multiple alignment
Variant Information
Position: Chr10:4643538..4646757 (+ strand)
Length: 3220
Functional Information:
Description: Similar to Sporulation protein RMD1. [G7JWQ1, Medicago truncatula]
InterPro: Protein of unknown function DUF155 (IPR003734)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:7.92,7.05,5.57,7.49,5.11,2.25,7.60,4.43
Arabidopsis thaliana homolog: AT1G69380.1
Automatic updates:
Name: NM_001255804 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100815826 (LOC100815826), mRNA; nuclear gene for mitochondrial product.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:4643538..4643630 (+ strand)
Length: 93
Type: five_prime_UTR
Position: Chr10:4643631..4643857 (+ strand)
Length: 227
Type: CDS
Position: Chr10:4644508..4644622 (+ strand)
Length: 115
Type: CDS
Position: Chr10:4645121..4645280 (+ strand)
Length: 160
Type: CDS
Position: Chr10:4645372..4645520 (+ strand)
Length: 149
Type: CDS
Position: Chr10:4645614..4645765 (+ strand)
Length: 152
Type: CDS
Position: Chr10:4645991..4646105 (+ strand)
Length: 115
Type: CDS
Position: Chr10:4646359..4646496 (+ strand)
Length: 138
Type: CDS
Position: Chr10:4646497..4646757 (+ strand)
Length: 261
Type: three_prime_UTR


>Vigan.10G046300.01
AAAAGGGAAA AAAAAAGTCA CCACTCAAAG CAAAAGCAAA GAGAAAAAAA AAAGCAGAAA ACCATAGGAA GAAGACCCTC
GTCCTCTCAG CGAATGGGCG GAAGATGGAA AACCTTCTCA CTGTTCTATA ATCGCTTAAC CAGTTCTTCA TCATCTTCTT
CTTCCTCTTC TTCCAAATCC CACTATCTCT CTTTCAACCG CTCTCTCTCT CTCGCCGCTG CACCTTCCGA AATACCCGAC
CCGGATCCAA TCGGGTTAAG TGCCCCGGAC ATCGACCCCA CCGTCAAAAT CCCCGTCAAA GCTTATTTCC TCTCTACCAG
TATAAATTTG AAGGGCATCC AGGCTGATAA TCACAGAAAC ATTGTTCCTC CCTCTTCTCG CTCATCTTCA AACTATGTTG
CTCTACGCTT CTGTGACTTT AATTTGAATG CTAAAGGACC TGGATTTCAC GTGAAAGCAA GCAACTGTCA ATACATGGTT
GTATATCAGT ATGGGTCAGC TGTCTTGTTC AATGTTGAGG ATCATGAAGT GGAAGGTTAC CTGGAATTAG TTAAGAGGCA
TGCATCTGGT TTACTTAGAG AGATGAGAAA AGATGATTAT GCAATAAAGG AGAAGCCATT GTTAGTTGAG GACATGCAAG
GAGGTCCAGA CTACATAGTT CTCAAATCGT TGGATACAGA TGGTATCCGC ATAATTGGAA GTGTACTGGG ACAAAGCATA
GCTCTGGATT ATTTTGTCTC GCAGGTTGAT GGTTTAGTTG AAGAGTTCGC CGGCATAAAC CGAGGAATGG AGAAAACTGG
AACCTTCACT ATGGATAAGA AGAAACTACT TCAGCTTGTT GGGAAGGCTA ACTCAAATTT GGCCGATGTG ATTCTTAAAG
TTGGGCTCTT TGAGAGATCC GAAATTGCTT GGAGGGATGC TAAGTATGCT CAAATATATG AGTATCTTAG GGAGGAGTAT
GAAGTTGCAC AACGCTTTGG AAACCTGGAT TTCAAATTGA AATTCGTAGA GCACAATATT CATTTTCTTC AAGAAGTTCT
GCAGAACAGA AAATCAGATT TCTTGGAATG GTGCATTATT GGTTTATTGA CTATTGAAAA TGTTCTATCA TTGTATGAGA
TTCTTCGAGC TACAAATTCA GTTTCTTAGC AAATAGTAAG AAGCTGAAGC TAGATTAGTT TGTAGTAACA ATTCTTGCAA
TTTTTTACCA ATGAAAATTT TGGCCTTGGT ATTTAACAAA TAAATCCAAA TATTCAAGAC CCATTGAACT GTATTATATC
TTTTGGAAAC TGTGATGAAA AAAAAAAGGA TGCAGGAGCA TCTAGTTCTA TCACAGATTG TAGAACTAGT TTTAATGACG
TAAGGATCAT TAATTATTTG CGTTGTTTTA ACGCAAGGAA CGTCTGCAAA 

>Vigan.10G046300.01
ATGGGCGGAA GATGGAAAAC CTTCTCACTG TTCTATAATC GCTTAACCAG TTCTTCATCA TCTTCTTCTT CCTCTTCTTC
CAAATCCCAC TATCTCTCTT TCAACCGCTC TCTCTCTCTC GCCGCTGCAC CTTCCGAAAT ACCCGACCCG GATCCAATCG
GGTTAAGTGC CCCGGACATC GACCCCACCG TCAAAATCCC CGTCAAAGCT TATTTCCTCT CTACCAGTAT AAATTTGAAG
GGCATCCAGG CTGATAATCA CAGAAACATT GTTCCTCCCT CTTCTCGCTC ATCTTCAAAC TATGTTGCTC TACGCTTCTG
TGACTTTAAT TTGAATGCTA AAGGACCTGG ATTTCACGTG AAAGCAAGCA ACTGTCAATA CATGGTTGTA TATCAGTATG
GGTCAGCTGT CTTGTTCAAT GTTGAGGATC ATGAAGTGGA AGGTTACCTG GAATTAGTTA AGAGGCATGC ATCTGGTTTA
CTTAGAGAGA TGAGAAAAGA TGATTATGCA ATAAAGGAGA AGCCATTGTT AGTTGAGGAC ATGCAAGGAG GTCCAGACTA
CATAGTTCTC AAATCGTTGG ATACAGATGG TATCCGCATA ATTGGAAGTG TACTGGGACA AAGCATAGCT CTGGATTATT
TTGTCTCGCA GGTTGATGGT TTAGTTGAAG AGTTCGCCGG CATAAACCGA GGAATGGAGA AAACTGGAAC CTTCACTATG
GATAAGAAGA AACTACTTCA GCTTGTTGGG AAGGCTAACT CAAATTTGGC CGATGTGATT CTTAAAGTTG GGCTCTTTGA
GAGATCCGAA ATTGCTTGGA GGGATGCTAA GTATGCTCAA ATATATGAGT ATCTTAGGGA GGAGTATGAA GTTGCACAAC
GCTTTGGAAA CCTGGATTTC AAATTGAAAT TCGTAGAGCA CAATATTCAT TTTCTTCAAG AAGTTCTGCA GAACAGAAAA
TCAGATTTCT TGGAATGGTG CATTATTGGT TTATTGACTA TTGAAAATGT TCTATCATTG TATGAGATTC TTCGAGCTAC
AAATTCAGTT TCTTAG

>Vigan.10G046300.01
MGGRWKTFSL FYNRLTSSSS SSSSSSSKSH YLSFNRSLSL AAAPSEIPDP DPIGLSAPDI DPTVKIPVKA YFLSTSINLK
GIQADNHRNI VPPSSRSSSN YVALRFCDFN LNAKGPGFHV KASNCQYMVV YQYGSAVLFN VEDHEVEGYL ELVKRHASGL
LREMRKDDYA IKEKPLLVED MQGGPDYIVL KSLDTDGIRI IGSVLGQSIA LDYFVSQVDG LVEEFAGINR GMEKTGTFTM
DKKKLLQLVG KANSNLADVI LKVGLFERSE IAWRDAKYAQ IYEYLREEYE VAQRFGNLDF KLKFVEHNIH FLQEVLQNRK
SDFLEWCIIG LLTIENVLSL YEILRATNSV S*