GBrowse Details

Vigan.10G048100.01

Basic Information:
Name: Vigan.10G048100.01
Multiple alignment
Variant Information
Position: Chr10:4864080..4867698 (- strand)
Length: 3619
Functional Information:
Description: Similar to Uncharacterized protein. [I3T6X5, Medicago truncatula]
GO: Molecular Function: protein binding (GO:0005515)
InterPro: Ankyrin repeat (IPR002110)
Ankyrin repeat-containing domain (IPR020683)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:70.63,50.94,15.17,18.42,19.34,18.58,15.49,17.28
Arabidopsis thaliana homolog: AT2G03430.1
Automatic updates:
Name: NM_001251227 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ankyrin repeat-containing protein (LOC100499930), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:4864080..4864274 (- strand)
Length: 195
Type: three_prime_UTR
Position: Chr10:4864275..4864406 (- strand)
Length: 132
Type: CDS
Position: Chr10:4865466..4865612 (- strand)
Length: 147
Type: CDS
Position: Chr10:4865731..4865855 (- strand)
Length: 125
Type: CDS
Position: Chr10:4867057..4867189 (- strand)
Length: 133
Type: CDS
Position: Chr10:4867348..4867533 (- strand)
Length: 186
Type: CDS
Position: Chr10:4867534..4867698 (- strand)
Length: 165
Type: five_prime_UTR


>Vigan.10G048100.01
TGTGTTTGCT ACTTAGATTT GAGGAAATCT TCAGTTATTG TCTTTCCGAA CATTACTCTC CGAAAAAATA TAAAAAATCA
ATCCCAAAGA CATTAGAATT TTGACGTTAC AGTGCAGTGG CTCCCAGAGA AACGTGAAAA TCAGTGAGAG AAGAAAACGA
TAGAGATGGA AGTGGACAGC GAGAAGAAGC AACAATACTT GAAAGAGAAG GACTTGTTCA AAGCAGCTGA AGAAGGTGAT
GCTGCAACGT TCCAAGCTCT CTCCGCTGAA ACTCTCTCCA AAACGCTCTC TCTCAGAAAC GAAGATGCTC GCTCCCTTCT
CCACGTTGCC GCCTCTTTCG GCCACTCCCA GGTGGTGAAG ACACTGTTAT CTTGTGATGG GTCTGCTTGT GTGGTGAATA
GTGTCGATGA GGAAGGTTGG GCACCGCTTC ACTCCGCCGC CAGCATTGGG AATTTGGAGA TAGTAGATAC TCTATTGAGC
AAAGGAGCTG ATGTTAATCT GAAAAATGAT GGGGGTCGCT CTGCTTTACA CTATGCAGCC AGCAAAGGTT GGATGAAGAT
TGCTGAAATC CTCATCTCGC ATGATGCCAA GATTAATATA AAGGATAAGA TTGGTAGCAC TCCATTGCAC CGAGCAGCTA
GCACTGGTAA ATCTGATATG TGTGAACTTT TGATTGAAGA GGGAGCAGAG GTTGACATTA CGGATAGAAC TGGTCAAACT
CCTCTGATGA ATGCTGTGAT TTACCATAAC AAAGAGGTAG CTCTCCTTCT GATAAGACAT GGAGCAGATG TGGATATGGA
GGACAAGGAA GGGTACACAG TACTTGGTCG TGCTACAGAT GAATTAAGAC CTATATTAAT CGATGCTGCC AAGGCCATGT
TGGAGTAATA TATCTGTAAG AAAATGAGAA AATGTTATCA CTATAAAAGA GCAGAATTGT GGTAGTTATA TTATTGGATT
CATTAGTAGT GGTTTTCTGC AAAAACTCAG ATCATCATAC CATTGTTCTG TTCAGGCAAA AACTCATCTT TACCTATATA
TATATATTTA GTTGTAAAAT TTTGCCATCT TTTTAGATTA GAA

>Vigan.10G048100.01
ATGGAAGTGG ACAGCGAGAA GAAGCAACAA TACTTGAAAG AGAAGGACTT GTTCAAAGCA GCTGAAGAAG GTGATGCTGC
AACGTTCCAA GCTCTCTCCG CTGAAACTCT CTCCAAAACG CTCTCTCTCA GAAACGAAGA TGCTCGCTCC CTTCTCCACG
TTGCCGCCTC TTTCGGCCAC TCCCAGGTGG TGAAGACACT GTTATCTTGT GATGGGTCTG CTTGTGTGGT GAATAGTGTC
GATGAGGAAG GTTGGGCACC GCTTCACTCC GCCGCCAGCA TTGGGAATTT GGAGATAGTA GATACTCTAT TGAGCAAAGG
AGCTGATGTT AATCTGAAAA ATGATGGGGG TCGCTCTGCT TTACACTATG CAGCCAGCAA AGGTTGGATG AAGATTGCTG
AAATCCTCAT CTCGCATGAT GCCAAGATTA ATATAAAGGA TAAGATTGGT AGCACTCCAT TGCACCGAGC AGCTAGCACT
GGTAAATCTG ATATGTGTGA ACTTTTGATT GAAGAGGGAG CAGAGGTTGA CATTACGGAT AGAACTGGTC AAACTCCTCT
GATGAATGCT GTGATTTACC ATAACAAAGA GGTAGCTCTC CTTCTGATAA GACATGGAGC AGATGTGGAT ATGGAGGACA
AGGAAGGGTA CACAGTACTT GGTCGTGCTA CAGATGAATT AAGACCTATA TTAATCGATG CTGCCAAGGC CATGTTGGAG
TAA

>Vigan.10G048100.01
MEVDSEKKQQ YLKEKDLFKA AEEGDAATFQ ALSAETLSKT LSLRNEDARS LLHVAASFGH SQVVKTLLSC DGSACVVNSV
DEEGWAPLHS AASIGNLEIV DTLLSKGADV NLKNDGGRSA LHYAASKGWM KIAEILISHD AKINIKDKIG STPLHRAAST
GKSDMCELLI EEGAEVDITD RTGQTPLMNA VIYHNKEVAL LLIRHGADVD MEDKEGYTVL GRATDELRPI LIDAAKAMLE
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