GBrowse Details

Vigan.10G049300.01

Basic Information:
Name: Vigan.10G049300.01
Multiple alignment
Variant Information
Position: Chr10:4922070..4926832 (- strand)
Length: 4763
Functional Information:
Description: Similar to Uncharacterized protein. [K7K7S2, Glycine max]
GO: Molecular Function: protein binding (GO:0005515)
InterPro: Leucine-rich repeat (IPR001611)
Leucine-rich repeat, typical subtype (IPR003591)
Leucine rich repeat 4 (IPR025875)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:52.86,31.95,43.66,34.19,37.99,28.90,41.09,52.44
Arabidopsis thaliana homolog: AT5G61240.2
Automatic updates:
Name: NM_001252762 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max probable leucine-rich repeat receptor-like protein kinase At1g35710-like (LOC100802317), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:4922070..4922358 (- strand)
Length: 289
Type: three_prime_UTR
Position: Chr10:4922359..4922449 (- strand)
Length: 91
Type: CDS
Position: Chr10:4922525..4922596 (- strand)
Length: 72
Type: CDS
Position: Chr10:4924311..4924382 (- strand)
Length: 72
Type: CDS
Position: Chr10:4924559..4924630 (- strand)
Length: 72
Type: CDS
Position: Chr10:4924725..4924805 (- strand)
Length: 81
Type: CDS
Position: Chr10:4924899..4925042 (- strand)
Length: 144
Type: CDS
Position: Chr10:4925149..4925220 (- strand)
Length: 72
Type: CDS
Position: Chr10:4925452..4925523 (- strand)
Length: 72
Type: CDS
Position: Chr10:4925924..4925995 (- strand)
Length: 72
Type: CDS
Position: Chr10:4926155..4926302 (- strand)
Length: 148
Type: CDS
Position: Chr10:4926445..4926634 (- strand)
Length: 190
Type: CDS
Position: Chr10:4926635..4926832 (- strand)
Length: 198
Type: five_prime_UTR


>Vigan.10G049300.01
TAAAAAACAA AAGAGAGAAA AGAAAACCAT CAAAACCTCA GTGCCGACGC CAAGGAGTGT GTTGTTGGAT GTTCAGATTC
CAACATGATA CCGCGTTCGC TCACTCTCAA CTTCAATTGA TCAATCACCA AAATCAAATT CCTACACCAC ACCTTCTCTC
TCCTTTGCAA AATCTGAATC AACAACATAC AGCAAAACAT GTCACTCAAC CACACCAACA ACACTTCAGA TCTACGATTC
CAATCCCACA ACACAAAAAA TAAACAAAAA CCGATTTCTC CAAGCGCCCT CAAAATGGCG CCTTCACCCT TCACTTCATT
ACCCTTCGTC TTCTTTACCC TTCTGTCAAT TCTCCACCTT TCGCACTGCA AGACCCTAAA GCGTGACGTT AAGGCTTTGA
ACGAGATCAA GGCTTCTCTT GGGTGGAGAG TGGTGTATGC GTGGGTCGGT GATGACCCTT GTGGTGATGG GGATCTTCCT
CCTTGGTCTG GTGTCACGTG TTCCACTGTC GGTGATTATC GTGTCGTGAC CGAGCTTGAG GTGTATGCGG TGTCGATTGT
CGGACCTTTT CCTACTGCTG TAACCAGCTT ACTGGATCTT ACACGGCTTG ATCTTCACAA TAACAAGTTG ACAGGGCCTA
TTCCTCCTCA AATTGGACGG TTGAGGCGTC TTAAAATACT AAATTTGAGG TGGAACAAAC TACAGGATGC AATTCCTCCA
GAAATTGGTC AGCTCAAAAG TTTAACACAT CTGTACCTAA GCTTCAACAA TTTTAAGGGA GAAATTCCCA AGGAGCTAGC
AAATCTGCCT GACCTTCGCT ATCTTCATCT CCATGAAAAC CGTTTAACCG GAAGAATACC ACCAGAATTG GGCACTCTAC
AAAATCTTCG GCACTTGGAT GCTGGTAACA ATCATTTGGT GGGTACCTTA AGGGAACTCA TTCGTATTGA AGGTTGCTTT
CCAGCCCTAC GCAATCTATA TCTAAACAAT AATTATTTTA CTGGAGGAGT ACCTGCACAA CTTGCTAACT TAACCAGTCT
TGAAATATTG TACCTATCCT ACAACAAAAT GTCAGGAGTT ATACCATCTA GCATTGCTCA TATTCCTAAA TTGACATACT
TGTACTTGGA TCACAATCAG TTTTCAGGGA GAATTCCCGA TCCCTTTTAT AAGCATCTAT TTTTGAAAGA AATGTACCTC
GAAGGAAATG CATTCCGGCC TGGTGTCAAC CCCATTGGTT TTCATAAAGT GCTTGAAGTT TCTGATTCAG ACTTCCTTGC
TTAATAAAAG CTCTAAATAT TTATAATTTT TCAGGAACTG TACTTGTATA ATTATTGAAA AAATCTTGTT CCTCTAATTA
CCTCAATGAA ATACCCACAT AGGTAATTCA ATTTTGTCTA ATCTGTCTTG TGGTAATAAA CAGTCTTTTT TAGTTTACTA
TTTAAGAGCT TTCCACGTTT CCAACAAGTT GTAATATATA GTCATGAACT CTTGTTATCA GCTTCAAAAT TGAAGAATGA
TATTGCATAT TTTTTCAGTA AAAGAATATT ACTGAATCCC TGTTGGACTC TAA

>Vigan.10G049300.01
ATGTCACTCA ACCACACCAA CAACACTTCA GATCTACGAT TCCAATCCCA CAACACAAAA AATAAACAAA AACCGATTTC
TCCAAGCGCC CTCAAAATGG CGCCTTCACC CTTCACTTCA TTACCCTTCG TCTTCTTTAC CCTTCTGTCA ATTCTCCACC
TTTCGCACTG CAAGACCCTA AAGCGTGACG TTAAGGCTTT GAACGAGATC AAGGCTTCTC TTGGGTGGAG AGTGGTGTAT
GCGTGGGTCG GTGATGACCC TTGTGGTGAT GGGGATCTTC CTCCTTGGTC TGGTGTCACG TGTTCCACTG TCGGTGATTA
TCGTGTCGTG ACCGAGCTTG AGGTGTATGC GGTGTCGATT GTCGGACCTT TTCCTACTGC TGTAACCAGC TTACTGGATC
TTACACGGCT TGATCTTCAC AATAACAAGT TGACAGGGCC TATTCCTCCT CAAATTGGAC GGTTGAGGCG TCTTAAAATA
CTAAATTTGA GGTGGAACAA ACTACAGGAT GCAATTCCTC CAGAAATTGG TCAGCTCAAA AGTTTAACAC ATCTGTACCT
AAGCTTCAAC AATTTTAAGG GAGAAATTCC CAAGGAGCTA GCAAATCTGC CTGACCTTCG CTATCTTCAT CTCCATGAAA
ACCGTTTAAC CGGAAGAATA CCACCAGAAT TGGGCACTCT ACAAAATCTT CGGCACTTGG ATGCTGGTAA CAATCATTTG
GTGGGTACCT TAAGGGAACT CATTCGTATT GAAGGTTGCT TTCCAGCCCT ACGCAATCTA TATCTAAACA ATAATTATTT
TACTGGAGGA GTACCTGCAC AACTTGCTAA CTTAACCAGT CTTGAAATAT TGTACCTATC CTACAACAAA ATGTCAGGAG
TTATACCATC TAGCATTGCT CATATTCCTA AATTGACATA CTTGTACTTG GATCACAATC AGTTTTCAGG GAGAATTCCC
GATCCCTTTT ATAAGCATCT ATTTTTGAAA GAAATGTACC TCGAAGGAAA TGCATTCCGG CCTGGTGTCA ACCCCATTGG
TTTTCATAAA GTGCTTGAAG TTTCTGATTC AGACTTCCTT GCTTAA

>Vigan.10G049300.01
MSLNHTNNTS DLRFQSHNTK NKQKPISPSA LKMAPSPFTS LPFVFFTLLS ILHLSHCKTL KRDVKALNEI KASLGWRVVY
AWVGDDPCGD GDLPPWSGVT CSTVGDYRVV TELEVYAVSI VGPFPTAVTS LLDLTRLDLH NNKLTGPIPP QIGRLRRLKI
LNLRWNKLQD AIPPEIGQLK SLTHLYLSFN NFKGEIPKEL ANLPDLRYLH LHENRLTGRI PPELGTLQNL RHLDAGNNHL
VGTLRELIRI EGCFPALRNL YLNNNYFTGG VPAQLANLTS LEILYLSYNK MSGVIPSSIA HIPKLTYLYL DHNQFSGRIP
DPFYKHLFLK EMYLEGNAFR PGVNPIGFHK VLEVSDSDFL A*