GBrowse Details

Vigan.10G050800.01

Basic Information:
Name: Vigan.10G050800.01
Multiple alignment
Variant Information
Position: Chr10:5096239..5099808 (+ strand)
Length: 3570
Functional Information:
Description: Similar to Uncharacterized protein. [E9KNA5, Glycine max]
GO: Molecular Function: protein domain specific binding (GO:0019904)
InterPro: 14-3-3 protein (IPR000308)
14-3-3 protein, conserved site (IPR023409)
14-3-3 domain (IPR023410)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.75,5.44,24.22,3.70,24.86,62.99,40.13,16.80
Automatic updates:
Name: NM_001251478 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 14-3-3 protein SGF14f (SGF14f), mRNA.
PubMed ID: 21120521 NCBI(pubmed)
Status: Known Variant
Name: NM_001251494 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 14-3-3 protein SGF14e (SGF14e), mRNA.
PubMed ID: 21120521 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr10:5096239..5096351 (+ strand)
Length: 113
Type: five_prime_UTR
Position: Chr10:5096352..5096424 (+ strand)
Length: 73
Type: CDS
Position: Chr10:5097496..5097802 (+ strand)
Length: 307
Type: CDS
Position: Chr10:5098172..5098259 (+ strand)
Length: 88
Type: CDS
Position: Chr10:5098369..5098478 (+ strand)
Length: 110
Type: CDS
Position: Chr10:5098567..5098715 (+ strand)
Length: 149
Type: CDS
Position: Chr10:5099098..5099144 (+ strand)
Length: 47
Type: CDS
Position: Chr10:5099428..5099433 (+ strand)
Length: 6
Type: CDS
Position: Chr10:5099434..5099808 (+ strand)
Length: 375
Type: three_prime_UTR


>Vigan.10G050800.01
GCATCACCCC ACATTTCCTT CTTCTTCTTC TCCTTATTCT TCATCTTCAT CAACTTCTAC GCCCTTTTTC TGTGTTTGTC
CTTCTCCTAG TTTTCTGATC TCTCTCTCCC ACCATGGCTG CCGAGAAAGA GAGAGACACA CAGGTTTACT TGGCCAAACT
TGCTGAGCAG GCCGAGAGAT ACGAAGAAAT GGTTGAGTGT ATGAAGAAAG TTGCAAAACT TGATCTTGAT CTAACTGTGG
AAGAAAGGAA CCTCCTCTCA GTGGGATACA AAAATGTCAT TGGTGCACGG AGGGCCTCCT GGCGCATCAT GTCCTCAATT
GAGCAGAAGG AAGAGGCTAA GGGTAATGAG CACAATGTCA AACTGATCAA GGGCTACCGC CAAAAAGTTG AGGAGGAGCT
CTCCAAAATT TGTGGTGACA TTCTGACTAT TATAGACAAG CACCTGGTTC CTTCTTCTGG ATCAGCAGAA GCTAGTGTTT
TCTACTATAA GATGAAAGGT GATTATTTCC GGTACCTTGC TGAGTTCAAG ACTGACCAAG AAAGAAAAGA TGCAGCTGAG
CAGTCACTTA AAGGATATGA GGCTGCTTCA GCCACTGCAA ACACTGATCT TCCATCAACA CATCCAATTC GTCTTGGACT
TGCCCTCAAT TTCTCAGTCT TTTACTATGA GATAATGAAC TCTCCTGAAA GGGCCTGCCA TTTGGCTAAA CAAGCTTTTG
ATGAGGCAAT TGCGGAATTG GACACCCTGA GTGAAGAGTC ATACAAGGAC AGCACCTTGA TCATGCAGCT GTTGAGAGAC
AACCTGACAC TCTGGACCTC TGATTTGCCA GAGGATGGAG GTGAGGACAA CATAAAAGCT GAAGAAGTCA AACCTACCGA
GCCTGAGCAT TGACCATGAT TCGATAGTCA GATGTCTAAG GTGTCAACAA GGGCGTTTTT CAGCTTTTCT TGCAATGGAT
TTGGACCAGA CAACAGGGCC ATTTTCTCCG TTACCAAAGC CAGAAGATCT GTGCCTTTCA TTTATTTACT TCAAACCTTT
TCTTTTTGTT GTCTTATCTG TTTTAAGTAA AGTGATCAGT TGAAGCAAAT GAACAATTTA AATTTACCCT TATAAGCATC
TCAATCCTTC ATTTTGTTTG CATTTACTTT TCTTAAGATG ATTATGTTTC CTATAGGCTC CTAGTCAGTA ATCATCTATA
CAAAAAACAA AACGCAATGG TTTAGAATGA ATAGTCTGTC ATAAAAACTA ATTGTGGATT AAAAAGGC

>Vigan.10G050800.01
ATGGCTGCCG AGAAAGAGAG AGACACACAG GTTTACTTGG CCAAACTTGC TGAGCAGGCC GAGAGATACG AAGAAATGGT
TGAGTGTATG AAGAAAGTTG CAAAACTTGA TCTTGATCTA ACTGTGGAAG AAAGGAACCT CCTCTCAGTG GGATACAAAA
ATGTCATTGG TGCACGGAGG GCCTCCTGGC GCATCATGTC CTCAATTGAG CAGAAGGAAG AGGCTAAGGG TAATGAGCAC
AATGTCAAAC TGATCAAGGG CTACCGCCAA AAAGTTGAGG AGGAGCTCTC CAAAATTTGT GGTGACATTC TGACTATTAT
AGACAAGCAC CTGGTTCCTT CTTCTGGATC AGCAGAAGCT AGTGTTTTCT ACTATAAGAT GAAAGGTGAT TATTTCCGGT
ACCTTGCTGA GTTCAAGACT GACCAAGAAA GAAAAGATGC AGCTGAGCAG TCACTTAAAG GATATGAGGC TGCTTCAGCC
ACTGCAAACA CTGATCTTCC ATCAACACAT CCAATTCGTC TTGGACTTGC CCTCAATTTC TCAGTCTTTT ACTATGAGAT
AATGAACTCT CCTGAAAGGG CCTGCCATTT GGCTAAACAA GCTTTTGATG AGGCAATTGC GGAATTGGAC ACCCTGAGTG
AAGAGTCATA CAAGGACAGC ACCTTGATCA TGCAGCTGTT GAGAGACAAC CTGACACTCT GGACCTCTGA TTTGCCAGAG
GATGGAGGTG AGGACAACAT AAAAGCTGAA GAAGTCAAAC CTACCGAGCC TGAGCATTGA 

>Vigan.10G050800.01
MAAEKERDTQ VYLAKLAEQA ERYEEMVECM KKVAKLDLDL TVEERNLLSV GYKNVIGARR ASWRIMSSIE QKEEAKGNEH
NVKLIKGYRQ KVEEELSKIC GDILTIIDKH LVPSSGSAEA SVFYYKMKGD YFRYLAEFKT DQERKDAAEQ SLKGYEAASA
TANTDLPSTH PIRLGLALNF SVFYYEIMNS PERACHLAKQ AFDEAIAELD TLSEESYKDS TLIMQLLRDN LTLWTSDLPE
DGGEDNIKAE EVKPTEPEH*