GBrowse Details

Vigan.10G054300.01

Basic Information:
Name: Vigan.10G054300.01
Multiple alignment
Variant Information
Position: Chr10:5564965..5571101 (+ strand)
Length: 6137
Functional Information:
Description: Similar to Uncharacterized protein. [I1JEH1, Glycine max]
GO: Biological Process: carbohydrate metabolic process (GO:0005975)
Biological Process: pentose-phosphate shunt (GO:0006098)
Molecular Function: 6-phosphogluconolactonase activity (GO:0017057)
InterPro: 6-phosphogluconolactonase, DevB-type (IPR005900)
Glucosamine/galactosamine-6-phosphate isomerase (IPR006148)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:27.08,15.18,14.11,13.80,18.45,14.66,21.22,14.21
Arabidopsis thaliana homolog: AT1G13700.1
Automatic updates:
Name: NM_001255735 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative 6-phosphogluconolactonase (LOC100809411), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001362701 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max probable 6-phosphogluconolactonase 2 (LOC100806593), mRNA.
PubMed ID: 28352959 NCBI(pubmed)
21667246 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr10:5564965..5565705 (+ strand)
Length: 741
Type: five_prime_UTR
Position: Chr10:5565706..5565878 (+ strand)
Length: 173
Type: CDS
Position: Chr10:5565958..5566093 (+ strand)
Length: 136
Type: CDS
Position: Chr10:5570368..5570859 (+ strand)
Length: 492
Type: CDS
Position: Chr10:5570860..5571101 (+ strand)
Length: 242
Type: three_prime_UTR


>Vigan.10G054300.01
CTTCATTCGG CAGCTTCTTC TGCGAACCAT CTTCTCTCTA TTTTTATATT TTTCTTTGTA AGTGTTTTCT TTCATTATTT
TGTGTGAAAT GTGTGGATTT TGTGTGTGAT GCAGTTTCAG GTTATGTTAA ACTGCATGAG ACTATGATTG ACCATCATGC
TTTGTTCTTT TATTAGTTTC TGCAGCAGTA GAGGGTGTCA ATTTAACATG TTTTATGATC TGGGGCATGT GTTTCTTCTT
TTGTAGTTTT CTTTTTCTGC TAGAGTGCAC TTGTTTTGAG CCTTTTTCAT TTCTCGGTCT AGATCTCTGG AAATTTAGGT
TGTGGCGATG ATACCTTTTT GTTCAATTGT TTTCTTTTTT TGACAATTAG AGAATCCACT TGCAAATTGA ATTCATGCGG
GTTAGCCGTC GTAGCTTATA GATTATTTTT AGAAAATACT TTAGCTTTAT AATATGTATA GGCATATAAG TCTTGTAGTC
AAACAAAAAG TAAAAATTGA AGTAATCGCT TGTCTATATT CTTATTTTCT GTATCGCTTG TCCAGAAATT TGTTTTCTAG
ATATGAAGCT GGATCTTGAA CTACTTAGAA ATTTCCTTTG TGTTTTAGGT TTAGGAAAAC TAAATGTTAA AGCTGTTTGT
GTTTTGAGTT TCACTAACTT TATTATTTCT ACATGAGATG ATTTTGATGC TTTTTTTGTC TTTTGTGGTT ACAAAATAGA
GCTATTGGAC CCTCCGGAAC CATGGCTCTT TCTGATGGTC AGAAGAATAG AGGAGAATTG AGGATTCATG AGAGTTTGGA
CGAGCTAATG ACCGATTTGG CAGACTATGT TGCTGAGTTA TCAGAGGCAT CAGTTAAAGA GCGAGGAGTC TTTGCCATTG
CTTTATCTGG TGGTTCTCTC ATTGGCTTAA TGGGAAAACT CTGCGAAGCT CCGTATAACA AGACCGTGGA CTGGTCCAAG
TGGTATATTT TCTGGGCTGA TGAGCGTGTT GTGGCAAAAA ACCATGCTGA TAGCAATTAT AAGCTTGCTA AAGATGGCCT
TTTGTCCAAG GTTCCTATTG TCCCCAGTCA TGTGCATTCT ATTAACGATT CTGTGTCAGC AGAAGAAGCT GCTGAAGATT
ATGAGTTTGT GATTCGACAG TTCGTGAAAA CACGTGTTGT CAGTGTCTCA GAGATTAGTG ACTGTCCAAA GTTTGATCTC
ATTCTGCTGG GATTGGGTCC AGACGGCCAC ATTGCCTCAT TGTTTCCCAA CCACTCAGCA CTGAATGAAA GGGAAGAATG
GGTAACTTTC ATTACTGACT CTCCCAAACC CCCACCTGAG AGAATCACAT TCACCATGCC TGTCATCAAT TCTGCATCAA
ATGTTGCAGT AGTTGTCACT GGTGACAGCA AAGCAGAATC TGTGCACTTG GCAATAGATG ATCTTGGACC TGACTGCCCA
TTAATACCAG CCAGAATGGT CCAACCAGCT ATGGGGAAGT TGGCGTGGTT TTTGGATAAA CTGGCTGCCT CAAAACTTGA
AGAATCCAAT TTAAACAAGT AGGAATTGTT GTAAGTTTGT ATGTAGTGTT AAGGGATTTG GCAGTTGTTG ATTATCATCA
GATCCTGTCT CTGCCTATCT CTCTTCTCTT GGATAGAAAT CTTTGCTTCT TTTTTTTTCT CCTTTTCTTG CTTTCTCTTG
GGAGGTTTTT GAGGGAAGTG TGGTATAGTT TTTGTAAGCG GCCAATAAAA GTGGTGGAGA GCATCATTCC ATGTTCCAAC
ACCCTTCTTT CCTTCTGATT CCTC

>Vigan.10G054300.01
ATGGCTCTTT CTGATGGTCA GAAGAATAGA GGAGAATTGA GGATTCATGA GAGTTTGGAC GAGCTAATGA CCGATTTGGC
AGACTATGTT GCTGAGTTAT CAGAGGCATC AGTTAAAGAG CGAGGAGTCT TTGCCATTGC TTTATCTGGT GGTTCTCTCA
TTGGCTTAAT GGGAAAACTC TGCGAAGCTC CGTATAACAA GACCGTGGAC TGGTCCAAGT GGTATATTTT CTGGGCTGAT
GAGCGTGTTG TGGCAAAAAA CCATGCTGAT AGCAATTATA AGCTTGCTAA AGATGGCCTT TTGTCCAAGG TTCCTATTGT
CCCCAGTCAT GTGCATTCTA TTAACGATTC TGTGTCAGCA GAAGAAGCTG CTGAAGATTA TGAGTTTGTG ATTCGACAGT
TCGTGAAAAC ACGTGTTGTC AGTGTCTCAG AGATTAGTGA CTGTCCAAAG TTTGATCTCA TTCTGCTGGG ATTGGGTCCA
GACGGCCACA TTGCCTCATT GTTTCCCAAC CACTCAGCAC TGAATGAAAG GGAAGAATGG GTAACTTTCA TTACTGACTC
TCCCAAACCC CCACCTGAGA GAATCACATT CACCATGCCT GTCATCAATT CTGCATCAAA TGTTGCAGTA GTTGTCACTG
GTGACAGCAA AGCAGAATCT GTGCACTTGG CAATAGATGA TCTTGGACCT GACTGCCCAT TAATACCAGC CAGAATGGTC
CAACCAGCTA TGGGGAAGTT GGCGTGGTTT TTGGATAAAC TGGCTGCCTC AAAACTTGAA GAATCCAATT TAAACAAGTA
G

>Vigan.10G054300.01
MALSDGQKNR GELRIHESLD ELMTDLADYV AELSEASVKE RGVFAIALSG GSLIGLMGKL CEAPYNKTVD WSKWYIFWAD
ERVVAKNHAD SNYKLAKDGL LSKVPIVPSH VHSINDSVSA EEAAEDYEFV IRQFVKTRVV SVSEISDCPK FDLILLGLGP
DGHIASLFPN HSALNEREEW VTFITDSPKP PPERITFTMP VINSASNVAV VVTGDSKAES VHLAIDDLGP DCPLIPARMV
QPAMGKLAWF LDKLAASKLE ESNLNK*