VIGGS:GBrowse

Vigan.10G054800.01

Basic Information:

Name:	Vigan.10G054800.01 Multiple alignment Variant Information
Position:	Chr10:5637280..5643296 (- strand)
Length:	6017

Functional Information:

Description:	Similar to Cytochrome b5. [G7JZ43, Medicago truncatula]
GO:	Molecular Function: heme binding (GO:0020037)
InterPro:	Cytochrome b5-like heme/steroid binding domain (IPR001199)
InterPro:	Cytochrome b5, heme-binding site (IPR018506)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:7.29,7.35,5.63,4.03,4.20,2.51,6.20,4.63
Arabidopsis thaliana homolog:	AT1G26340.1

Automatic updates:

Name:	NM_001248840 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100500537 (LOC100500537), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr10:5637280..5637483 (- strand)
Length:	204
Type:	three_prime_UTR

Position:	Chr10:5637484..5637900 (- strand)
Length:	417
Type:	CDS

Position:	Chr10:5643144..5643230 (- strand)
Length:	87
Type:	CDS

Position:	Chr10:5643231..5643296 (- strand)
Length:	66
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.10G054800.01
TGCTCCATCG CTCTCGATTC CTCCCCATTT CCTAACATCC TGGATTCCCT CCCAACAAAA TTTAACATGC CAACCCTCAC
CAATTTCTAC GCCATTCAAG ATTTATCCCA CCACAAAACC AAAGACGATT GCTGGATCCT CGTCGGTGGA AAGGTATACG
ACGTGACACA ATATTTGGAT GATCATCCTG GTGGAGACGA TGTAATCCTT GCTGCAACAG GTACCTTCCT CAGCTTCCTA
TATTCTTCAT TACCCTTTGG ACTGCATGCA AATCTAAGCA TGGAAAAATT CATCCAATGT CAGTATTCAA ATCTAAATGC
ACCTTTTATA CTTTACTTTA ATGAAGGGAA AGATGCAACA GAAGATTTTG AAGATGCTGG CCACAGCAAA AGTGCAAGAG
AACTTATGGA GCAGTATTGC ATTGGTGAGC TCGACCCATC ACCTCCAGTT TCCACCAAGC ATAGCTATTC TGAAAAATTC
ATGCAGCTGA CAAAGCAATA TTGGGCTGTT CCTGTGACCT TTGTTGGTAT CTCAGTGGTA GTTGGTTTCT TATACTTACG
TAAGAAGTAA CATTACACAA AGTCTGCAAT TCAATTTATA TTAATGTTGC AAATCATTGC AACAAATTTT GTTTTGTATT
CATTTGAAAG ATAGATGTCA TTAGAAAAGA CTGGCTTATT TCAATATGGT AACAATTGAT TACATGCATA ATATTACATT
AAAGGATTGG TCAAAGAATA GATGATGAAA CATGCGCATT TTCAGATTTA TTGA

[show][hide][copy]CDS

>Vigan.10G054800.01
ATGCCAACCC TCACCAATTT CTACGCCATT CAAGATTTAT CCCACCACAA AACCAAAGAC GATTGCTGGA TCCTCGTCGG
TGGAAAGGTA TACGACGTGA CACAATATTT GGATGATCAT CCTGGTGGAG ACGATGTAAT CCTTGCTGCA ACAGGTACCT
TCCTCAGCTT CCTATATTCT TCATTACCCT TTGGACTGCA TGCAAATCTA AGCATGGAAA AATTCATCCA ATGTCAGTAT
TCAAATCTAA ATGCACCTTT TATACTTTAC TTTAATGAAG GGAAAGATGC AACAGAAGAT TTTGAAGATG CTGGCCACAG
CAAAAGTGCA AGAGAACTTA TGGAGCAGTA TTGCATTGGT GAGCTCGACC CATCACCTCC AGTTTCCACC AAGCATAGCT
ATTCTGAAAA ATTCATGCAG CTGACAAAGC AATATTGGGC TGTTCCTGTG ACCTTTGTTG GTATCTCAGT GGTAGTTGGT
TTCTTATACT TACGTAAGAA GTAA

[show][hide][copy]PROTEIN

>Vigan.10G054800.01
MPTLTNFYAI QDLSHHKTKD DCWILVGGKV YDVTQYLDDH PGGDDVILAA TGTFLSFLYS SLPFGLHANL SMEKFIQCQY
SNLNAPFILY FNEGKDATED FEDAGHSKSA RELMEQYCIG ELDPSPPVST KHSYSEKFMQ LTKQYWAVPV TFVGISVVVG
FLYLRKK*