GBrowse Details

Vigan.10G055600.01

Basic Information:
Name: Vigan.10G055600.01
Multiple alignment
Variant Information
Position: Chr10:5714569..5717596 (- strand)
Length: 3028
Functional Information:
Description: Similar to Salicylic acid methyl transferase-like protein. [B5A7G4, Glycine max]
GO: Molecular Function: methyltransferase activity (GO:0008168)
InterPro: SAM dependent carboxyl methyltransferase (IPR005299)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.32,8.08,6.83,0.19,3.80,0.47,12.98
Arabidopsis thaliana homolog: AT4G36470.1
Automatic updates:
Name: NM_001250176 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max salicylic acid methyl transferase-like protein (SABATH1), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:5714569..5714842 (- strand)
Length: 274
Type: three_prime_UTR
Position: Chr10:5714843..5715175 (- strand)
Length: 333
Type: CDS
Position: Chr10:5716034..5716306 (- strand)
Length: 273
Type: CDS
Position: Chr10:5716541..5716945 (- strand)
Length: 405
Type: CDS
Position: Chr10:5717054..5717128 (- strand)
Length: 75
Type: CDS
Position: Chr10:5717129..5717596 (- strand)
Length: 468
Type: five_prime_UTR


>Vigan.10G055600.01
TGAATCATTA GTGTCAACAA AGAAAAAGGC AAAACCACCC ATACGTTAAG CCCTTTAAGT TAGGAAAGGG GAGAGGGATC
AATCACCAAA TACATCAACT CCTGCTCTCT GAGTACTCTT CCATACACAA CATTTTGGAC TTTAAAATTT AATCAAATTC
GCTTCACAAC CATCTCATTT AACTTAACTT AACCACATTG CTTGGTTACA CTTGTTTCTC AACAAGCATC ATCAGCACCA
ACAATTGTGG CTAATGTGCC ACTCTAAAGG TTCATTAATT CTGAAATCCC ATGATTAATT AGTAATGTGC CATATATTTT
GGAAGAGCAG GGCTAAAGAA GAATTACAAA AGGAAAAAAA GAAAAAAAGA AAAGCAATTG GCCACATCAT TGAAATCTCC
CTTTAAAAGA TGGCCACAAC TTCACTAACA AGCTAGAAAG GCTTCATCCA ACTGAAACAA ACAAAAAAAT GGATGTAGAG
AAAGCCTTCC ACATGACTGG AGGAGTTGGC AAAACTAGCT ATGCCAAGAA TTCCTCACTG CAGAAGAAGG CATCTGATAA
GGTGAAGCAC ATAATCATAC AAACAGTTGA GGAGCTTTAC CTTGCAACAA CTCCCATGAG CATAGGCATT GCTGATTTGG
GTTGTTCCTC TGGACCAAAC ACCCTTTCAA TCATCAAAGA TATCTTTCAG ACCATCCAAG GCATAAGCCA CAAGATCATG
CACCACTCCA CTGAGTTCAG GGTCTACTTC AATGATCTCC CAACAAATGA CTTCAATTCA ATTTTCAAGG CCCTGCCAGA
GTTCCACAAG TTGCTTAGGC AAGACAGGAA AAATGGCCTC CCTTCCATTT TCATGGGAGG CTACCCTGGC TCATTCTATG
GAAGATTATT CCCAAACAGT TACTTGCACT TTGTCCATTC CTCCTACAGT CTACACTGGC TTTCAAGGGT TCCTCCAGCA
CTCTATGATG AGCACAAAAC ACCATTGAAC AAAGGTTGTG TTTATATCTG TGAGTCAAGC CCTTCTGTGG TGTCTCAAGC
ATACTCTCTT CAATTCCAAG AAGATTTTTC CTTGTTCCTT CGGTCAAGGT CCGAAGAACT GGTAGTTGGT GGGAGAATGG
TTCTGATATT TCTGGGAAGA AGGGGCCCAG AACATGTTGA CAGAGGCAAC TCTTTCTTTT GGGAGATTCT TTCCCGTTCA
TTTGCTACTC TAGTCTCACA GGGAGAAATA GAGCAAGATG TGTTTGATTC ATATGATGTA CATTTCTATG CACCATCAAA
GGAAGAGATA GAAGAAGAGG TAAAGAAAGA AGGGTCATTG AAGTTGGAGA GGCTAGAGAT GTTTGAGATG GACAAAGGTG
AAGATGGCAG TGAGAGCTAT GGAACACAGG TTGCTGTAGC AGTTAGGGCC ATTCAAGAAT CGATGATCTC ACACCATTTT
GGAGAGAGAA TCTTGGACAG TTTGTTTGAA AATTATGCAA GATTGATAGA TGAAGAAATG GCTAAGGAGG ATATTAGACC
AATCTCTTTT GTTCTGGTTC TCAGAAAAAT ATAATTGATT CAACTAAACA ACAAAATTAA TCTTCTATTA AGGTTATTAA
TTATTTATTT TGGTTTGCAG TAATGAGACG TGTTTAAATT GCAGCCATTT GCATCACTGT AATCATGATT AGTTCAATGT
AAAGTCTTGC TGTTTCACTT TCCTTCATTT ATGTATACTT TTCCAACTGG GGTGATATAT TTCAAGGTTT TTTTCATCAT
ACAGTATTAA TATTAATGAT GAGTTTGAAA ATGCAATATG TATGGGACCT CCAAAAAATG AGGAAGAG

>Vigan.10G055600.01
ATGGATGTAG AGAAAGCCTT CCACATGACT GGAGGAGTTG GCAAAACTAG CTATGCCAAG AATTCCTCAC TGCAGAAGAA
GGCATCTGAT AAGGTGAAGC ACATAATCAT ACAAACAGTT GAGGAGCTTT ACCTTGCAAC AACTCCCATG AGCATAGGCA
TTGCTGATTT GGGTTGTTCC TCTGGACCAA ACACCCTTTC AATCATCAAA GATATCTTTC AGACCATCCA AGGCATAAGC
CACAAGATCA TGCACCACTC CACTGAGTTC AGGGTCTACT TCAATGATCT CCCAACAAAT GACTTCAATT CAATTTTCAA
GGCCCTGCCA GAGTTCCACA AGTTGCTTAG GCAAGACAGG AAAAATGGCC TCCCTTCCAT TTTCATGGGA GGCTACCCTG
GCTCATTCTA TGGAAGATTA TTCCCAAACA GTTACTTGCA CTTTGTCCAT TCCTCCTACA GTCTACACTG GCTTTCAAGG
GTTCCTCCAG CACTCTATGA TGAGCACAAA ACACCATTGA ACAAAGGTTG TGTTTATATC TGTGAGTCAA GCCCTTCTGT
GGTGTCTCAA GCATACTCTC TTCAATTCCA AGAAGATTTT TCCTTGTTCC TTCGGTCAAG GTCCGAAGAA CTGGTAGTTG
GTGGGAGAAT GGTTCTGATA TTTCTGGGAA GAAGGGGCCC AGAACATGTT GACAGAGGCA ACTCTTTCTT TTGGGAGATT
CTTTCCCGTT CATTTGCTAC TCTAGTCTCA CAGGGAGAAA TAGAGCAAGA TGTGTTTGAT TCATATGATG TACATTTCTA
TGCACCATCA AAGGAAGAGA TAGAAGAAGA GGTAAAGAAA GAAGGGTCAT TGAAGTTGGA GAGGCTAGAG ATGTTTGAGA
TGGACAAAGG TGAAGATGGC AGTGAGAGCT ATGGAACACA GGTTGCTGTA GCAGTTAGGG CCATTCAAGA ATCGATGATC
TCACACCATT TTGGAGAGAG AATCTTGGAC AGTTTGTTTG AAAATTATGC AAGATTGATA GATGAAGAAA TGGCTAAGGA
GGATATTAGA CCAATCTCTT TTGTTCTGGT TCTCAGAAAA ATATAA

>Vigan.10G055600.01
MDVEKAFHMT GGVGKTSYAK NSSLQKKASD KVKHIIIQTV EELYLATTPM SIGIADLGCS SGPNTLSIIK DIFQTIQGIS
HKIMHHSTEF RVYFNDLPTN DFNSIFKALP EFHKLLRQDR KNGLPSIFMG GYPGSFYGRL FPNSYLHFVH SSYSLHWLSR
VPPALYDEHK TPLNKGCVYI CESSPSVVSQ AYSLQFQEDF SLFLRSRSEE LVVGGRMVLI FLGRRGPEHV DRGNSFFWEI
LSRSFATLVS QGEIEQDVFD SYDVHFYAPS KEEIEEEVKK EGSLKLERLE MFEMDKGEDG SESYGTQVAV AVRAIQESMI
SHHFGERILD SLFENYARLI DEEMAKEDIR PISFVLVLRK I*