GBrowse Details

Vigan.10G067400.01

Basic Information:
Name: Vigan.10G067400.01
Multiple alignment
Variant Information
Position: Chr10:7432485..7438142 (+ strand)
Length: 5658
Functional Information:
Description: Similar to peptidyl-prolyl cis-trans isomerase-like isoform X2. [XP_004490023.1, Cicer arietinum]
GO: Biological Process: protein folding (GO:0006457)
Molecular Function: peptidyl-prolyl cis-trans isomerase activity (GO:0003755)
InterPro: Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain (IPR002130)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:5.67,4.85,25.51,24.35,29.87,25.22,33.26,19.99
Arabidopsis thaliana homolog: AT1G26940.1
Automatic updates:
Name: NM_001255096 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max peptidyl-prolyl cis-trans isomerase CYP45 (CYP45), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:7432485..7432657 (+ strand)
Length: 173
Type: five_prime_UTR
Position: Chr10:7432658..7432768 (+ strand)
Length: 111
Type: CDS
Position: Chr10:7433149..7433262 (+ strand)
Length: 114
Type: CDS
Position: Chr10:7433363..7433511 (+ strand)
Length: 149
Type: CDS
Position: Chr10:7435061..7435133 (+ strand)
Length: 73
Type: CDS
Position: Chr10:7435229..7435318 (+ strand)
Length: 90
Type: CDS
Position: Chr10:7436279..7436318 (+ strand)
Length: 40
Type: CDS
Position: Chr10:7437637..7437719 (+ strand)
Length: 83
Type: CDS
Position: Chr10:7437801..7437821 (+ strand)
Length: 21
Type: CDS
Position: Chr10:7437822..7438142 (+ strand)
Length: 321
Type: three_prime_UTR


>Vigan.10G067400.01
TGGAAACAAA AGACCCAAAA CGAATCTCAT GAAAAAAAAA AAAATAACAT GAGAGGAAGG TACAAATGAT ACCAACAACT
AACAGAAAAA AGTTTCAATT TTCAGTTTTC TGTACTTGTG ATGGTTGACT CTAGTTCTCG GAGGTGAAAA GGTACTAAAT
TACGTTGGAC GAAATGTGGA TACGAGGATT CAGATTTTGG ATCAAAGGCT GTACTTTGTT GGCGTTAATA TCTGCAATTT
CCGCTCTGGA ACCCGAACTG GGATCGACTC GCGTCGTCTT TCAGACAAAG TATGGGGACA TTGAATTTGG TTTCTATCCA
ACCGTTGCAC CCAAAACTGT TGACCACATT TTTAAGCTCG TGCGACTTGG AGGATATAAC ACTAACCATT TCTTTCGGGT
GGATAAGGGA TTTGTGGCCC AAGTAGCAGA TGTCTCGAAT GGGAGATCGG CTCCCATGAA TGAGGATCAG AAAAGAGAGT
CTGATAAGAC TGTTGTTGGT GAATTTAGTG ACGTCAAACA TGTTCGGGGT ATTCTTTCCA TGGGAAGGTA TGATGATCCA
GACAGTGGTT CATCCTCATT TTCAATACTA CTTGGAGATG CTCCTCATCT TGATGGAAAG TATGCAATAT TTGGAAAAGT
TACTAAAGGC GATGAGACAT TGACAAAGCT CGAGCAACTA CCTACCCGCA AAGAGGGTAT ATTTGTAATG CCAATGGAAC
GCATCACTAT CTTGTCATCT TATTACTATG ACAAAGAGAC AGAAAATTGT CAGCAAGACA GATCAGTTTT GAAGCTCAGA
CTAGCTGCCT CAGCTGTTGA AGTTGAACGA CAGAGGATGA AATGCTTCCC CTGATAGTTT CAAGTTTGCT ATTAAATTGG
AATGAACATT ACACTGCTGC ATTCTCATTT TATATAATGT CCTAGTAGTG TATCCAGATA CTGTGTTTTT TTTTATGTAC
GAGATATTGT TTAAACTATG CACAACCATG AAAAAAAATT GTTCTGGGCC TTGAGATTTG GGATATAATG AAAATAATCG
GGGTTAAGGG TATGTTTGAT TTAGGTTTTA ATATAAATAG TTTTCATACA TGTTCTCAAC ATTATGTTTT CTCATATTTC
AACATATATG ATACTTTTAT CACTGACATG AATACGTTTG AATATGTTTA AAATC

>Vigan.10G067400.01
ATGTGGATAC GAGGATTCAG ATTTTGGATC AAAGGCTGTA CTTTGTTGGC GTTAATATCT GCAATTTCCG CTCTGGAACC
CGAACTGGGA TCGACTCGCG TCGTCTTTCA GACAAAGTAT GGGGACATTG AATTTGGTTT CTATCCAACC GTTGCACCCA
AAACTGTTGA CCACATTTTT AAGCTCGTGC GACTTGGAGG ATATAACACT AACCATTTCT TTCGGGTGGA TAAGGGATTT
GTGGCCCAAG TAGCAGATGT CTCGAATGGG AGATCGGCTC CCATGAATGA GGATCAGAAA AGAGAGTCTG ATAAGACTGT
TGTTGGTGAA TTTAGTGACG TCAAACATGT TCGGGGTATT CTTTCCATGG GAAGGTATGA TGATCCAGAC AGTGGTTCAT
CCTCATTTTC AATACTACTT GGAGATGCTC CTCATCTTGA TGGAAAGTAT GCAATATTTG GAAAAGTTAC TAAAGGCGAT
GAGACATTGA CAAAGCTCGA GCAACTACCT ACCCGCAAAG AGGGTATATT TGTAATGCCA ATGGAACGCA TCACTATCTT
GTCATCTTAT TACTATGACA AAGAGACAGA AAATTGTCAG CAAGACAGAT CAGTTTTGAA GCTCAGACTA GCTGCCTCAG
CTGTTGAAGT TGAACGACAG AGGATGAAAT GCTTCCCCTG A

>Vigan.10G067400.01
MWIRGFRFWI KGCTLLALIS AISALEPELG STRVVFQTKY GDIEFGFYPT VAPKTVDHIF KLVRLGGYNT NHFFRVDKGF
VAQVADVSNG RSAPMNEDQK RESDKTVVGE FSDVKHVRGI LSMGRYDDPD SGSSSFSILL GDAPHLDGKY AIFGKVTKGD
ETLTKLEQLP TRKEGIFVMP MERITILSSY YYDKETENCQ QDRSVLKLRL AASAVEVERQ RMKCFP*