VIGGS:GBrowse

Vigan.10G072500.01

Basic Information:

Name:	Vigan.10G072500.01 Multiple alignment Variant Information
Position:	Chr10:8285869..8286924 (+ strand)
Length:	1056

Functional Information:

Description:	Similar to Thioredoxin. [V7CGU6, Phaseolus vulgaris]
GO:	Biological Process: glycerol ether metabolic process (GO:0006662)
	Biological Process: cell redox homeostasis (GO:0045454)
	Molecular Function: protein disulfide oxidoreductase activity (GO:0015035)
InterPro:	Thioredoxin (IPR005746)
	Thioredoxin-like fold (IPR012336)
	Thioredoxin domain (IPR013766)
	Thioredoxin, conserved site (IPR017937)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.09,0.05,54.37,0.33,25.19,63.22,43.40,7.74

Automatic updates:

Name:	NM_001249123 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max TRX domain-containing protein (LOC100527691), mRNA.
PubMed ID:	21667246 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr10:8285869..8285919 (+ strand)
Length:	51
Type:	five_prime_UTR

Position:	Chr10:8285920..8286048 (+ strand)
Length:	129
Type:	CDS

Position:	Chr10:8286150..8286272 (+ strand)
Length:	123
Type:	CDS

Position:	Chr10:8286498..8286629 (+ strand)
Length:	132
Type:	CDS

Position:	Chr10:8286630..8286924 (+ strand)
Length:	295
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.10G072500.01
CTAATCTCCA ACCAATTTTG TTTTTTCATT CCACAAAGCT GAATTAGCAT CATGGGAGCC AACTTTTCGA CTTTTGAGTT
TGTGGAAAAA TCATCAGACT CATCATCGTT GATCCTCACC TTCCATTCCA CTGCTAAATG GAACGCACAC TTTCATGCCT
CCAAAGAAAC TAACAAGCTC TTGGTCATCG ACTTCACTGC TACGTGGTGT GGACCTTGCA AAACCATGGA CCCAGTAATA
AAAGAATTTG CTGCAAAATA CACAGACGTG GAGTTCATCA AGATTGATGT GGATGAGTTG ATGGAGGTCG CACAGGCTTT
CCAGGTGCAA ACAATGCCAA CATTTATACT GATAAAGAAA GGGAAAGTAG TGGAAAAGGT TGTGGGAGCC AAAAAGGAGG
AGTTGCAGAA GCTCATTCAG AAACGCAGGA ATTGATGAGT GCATGCTTGC ATCTATCTCG TACTGTAGTA ATAAAGTACT
TTGGGATGAC TTTGGATTAT ATATATATAT ATATATATAT ATATATATAT ATATATATAT ATATATATAT ATGTATGTAT
GTATATGTAT ATATACATAA AAAGAGAGAG ATAAAGTGTT GCTGTCTGCC ATGAGACTGA CAGTGAAGTG TGTAAATCTA
GCTGTAGCAT ATGTCGTGTA TGCATGCATG CTTATTTTAA TTATAAGTTG TATCTTGTTA TATATGTTTA AATGGTTCTT
TTATGTTAAA

[show][hide][copy]CDS

>Vigan.10G072500.01
ATGGGAGCCA ACTTTTCGAC TTTTGAGTTT GTGGAAAAAT CATCAGACTC ATCATCGTTG ATCCTCACCT TCCATTCCAC
TGCTAAATGG AACGCACACT TTCATGCCTC CAAAGAAACT AACAAGCTCT TGGTCATCGA CTTCACTGCT ACGTGGTGTG
GACCTTGCAA AACCATGGAC CCAGTAATAA AAGAATTTGC TGCAAAATAC ACAGACGTGG AGTTCATCAA GATTGATGTG
GATGAGTTGA TGGAGGTCGC ACAGGCTTTC CAGGTGCAAA CAATGCCAAC ATTTATACTG ATAAAGAAAG GGAAAGTAGT
GGAAAAGGTT GTGGGAGCCA AAAAGGAGGA GTTGCAGAAG CTCATTCAGA AACGCAGGAA TTGA

[show][hide][copy]PROTEIN

>Vigan.10G072500.01
MGANFSTFEF VEKSSDSSSL ILTFHSTAKW NAHFHASKET NKLLVIDFTA TWCGPCKTMD PVIKEFAAKY TDVEFIKIDV
DELMEVAQAF QVQTMPTFIL IKKGKVVEKV VGAKKEELQK LIQKRRN*