VIGGS:GBrowse

Vigan.10G072700.01

Basic Information:

Name:	Vigan.10G072700.01 Multiple alignment Variant Information
Position:	Chr10:8304236..8305293 (+ strand)
Length:	1058

Functional Information:

Description:	Similar to Thioredoxin. [V7CGZ9, Phaseolus vulgaris]
GO:	Biological Process: glycerol ether metabolic process (GO:0006662)
	Biological Process: cell redox homeostasis (GO:0045454)
	Molecular Function: protein disulfide oxidoreductase activity (GO:0015035)
InterPro:	Thioredoxin (IPR005746)
	Thioredoxin-like fold (IPR012336)
	Thioredoxin domain (IPR013766)
	Thioredoxin, conserved site (IPR017937)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.24,0.04,108.02,88.67,19.65,8.65,15.07,58.85

Automatic updates:

Name:	NM_001250833 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100527298 (LOC100527298), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr10:8304236..8304344 (+ strand)
Length:	109
Type:	five_prime_UTR

Position:	Chr10:8304345..8304500 (+ strand)
Length:	156
Type:	CDS

Position:	Chr10:8304677..8304799 (+ strand)
Length:	123
Type:	CDS

Position:	Chr10:8304922..8305053 (+ strand)
Length:	132
Type:	CDS

Position:	Chr10:8305054..8305293 (+ strand)
Length:	240
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.10G072700.01
CACATTCCTA CTTCATCATA AATCCCTCTA TATATATTCC AAGTTTCAAA CCATTTTTCC ATCAACCAAA CCAATTAAGA
AACCTCAGAC TCCTACCTTC TTATACATCA TGCCACCCAC CATTTATAAC TTTAAGTCTT TTAGGTCTTC TGGGTCATTC
AATTATTCAA CACCAAAAAG AGACTCCGAT TCCAATATCC TTACTTTCCA CTCAACGGAT AAATGGAATG CTCATTTTAA
AGCTGTCAAA GAAACTAACA AGCTGATGGT ACTTGATTTC ACAGCTACAT GGTGTGGCCC TTGCAAACTC ATGGACCCAG
TTCTCCAAGA GTTTGCTGCA AAATACACAG ATGCTGAGTT CATCAAGATT GATGTGGAGG AGTTAAACGA AGTGTCTCAA
GCACTCCAGG TTTACCAATT GCCAACATTC ATACTCGTTA AGAAAGGGAA AGTTGCTGAT AGAGTGGTGG GGGTGAAGAA
GGAGGAGCTG AAAAGGTCGA TTGAGAATCA TAGAAAATAA TAATGAATCA CTATGCACTG TAATAAAATC AGAAAGGAGG
AAAAGACAAA CTATCAACAA CTGAGTTTGA AATAAGCTGG TTTCATCAGA AGCTATTTAT TCTTTTACCA TTACAAGTGT
TCAATGTACT ATGTTGCATG TAGTTGCCTA TATTTAACAA ACAAGGGCAT CTATTAGCAT ATATCAATAT CATCCCCCTC
TTTTGGATTA TTTGACTCTC CTCATCAAAA TCCTCCAGCA

[show][hide][copy]CDS

>Vigan.10G072700.01
ATGCCACCCA CCATTTATAA CTTTAAGTCT TTTAGGTCTT CTGGGTCATT CAATTATTCA ACACCAAAAA GAGACTCCGA
TTCCAATATC CTTACTTTCC ACTCAACGGA TAAATGGAAT GCTCATTTTA AAGCTGTCAA AGAAACTAAC AAGCTGATGG
TACTTGATTT CACAGCTACA TGGTGTGGCC CTTGCAAACT CATGGACCCA GTTCTCCAAG AGTTTGCTGC AAAATACACA
GATGCTGAGT TCATCAAGAT TGATGTGGAG GAGTTAAACG AAGTGTCTCA AGCACTCCAG GTTTACCAAT TGCCAACATT
CATACTCGTT AAGAAAGGGA AAGTTGCTGA TAGAGTGGTG GGGGTGAAGA AGGAGGAGCT GAAAAGGTCG ATTGAGAATC
ATAGAAAATA A

[show][hide][copy]PROTEIN

>Vigan.10G072700.01
MPPTIYNFKS FRSSGSFNYS TPKRDSDSNI LTFHSTDKWN AHFKAVKETN KLMVLDFTAT WCGPCKLMDP VLQEFAAKYT
DAEFIKIDVE ELNEVSQALQ VYQLPTFILV KKGKVADRVV GVKKEELKRS IENHRK*