VIGGS:GBrowse

Vigan.10G076000.01

Basic Information:

Name:	Vigan.10G076000.01 Multiple alignment Variant Information
Position:	Chr10:8643778..8646084 (- strand)
Length:	2307

Functional Information:

Description:	Similar to MYB transcription factor MYB138. [Q0PJI4, Glycine max]
GO:	Molecular Function: nucleic acid binding (GO:0003676)
	Molecular Function: DNA binding (GO:0003677)
	Molecular Function: chromatin binding (GO:0003682)
	Molecular Function: zinc ion binding (GO:0008270)
InterPro:	SANT/Myb domain (IPR001005)
	Zinc finger, CCHC-type (IPR001878)
	Myb domain, plants (IPR006447)
	Homeodomain-like (IPR009057)
	Myb domain (IPR017930)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.14,0.56,29.20,150.96,49.59,29.30,13.62,90.87
Arabidopsis thaliana homolog:	AT1G70000.1

Automatic updates:

Name:	KT031178 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max clone HN_CCL_87 MYB/HD-like transcription factor (Glyma02g03020.1) mRNA, partial cds.
PubMed ID:	26268547 NCBI(pubmed)
Status:	Known Variant

Name:	KT031247 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max clone HN_CCL_86 MYB/HD-like transcription factor (Glyma01g04530.1) mRNA, partial cds.
PubMed ID:	26268547 NCBI(pubmed)
Status:	Known Variant

Name:	KT031248 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max clone HN_CCL_26 MYB/HD-like transcription factor (Glyma01g04530.1_like1) mRNA, complete cds.
PubMed ID:	26268547 NCBI(pubmed)
Status:	Known Variant

Name:	KT031249 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max clone HN_CCL_27 MYB/HD-like transcription factor (Glyma01g04530.1_like2) mRNA, complete cds.
PubMed ID:	26268547 NCBI(pubmed)
Status:	Known Variant

Name:	NM_001317417 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max transcription factor MYB1R1 (LOC780554), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr10:8643778..8644330 (- strand)
Length:	553
Type:	three_prime_UTR

Position:	Chr10:8644331..8644762 (- strand)
Length:	432
Type:	CDS

Position:	Chr10:8645026..8645234 (- strand)
Length:	209
Type:	CDS

Position:	Chr10:8645359..8645629 (- strand)
Length:	271
Type:	CDS

Position:	Chr10:8645630..8646084 (- strand)
Length:	455
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.10G076000.01
GCTTACCGAG GCAAGCCAAA CATGGCACAG TATTTGACGG TCCTGATTGA TGGATTCTGT CCCCTCAACG AAAAATGACC
ACCAATACCA TGACGACACC AATCGACGTT CATAATAATT TCTAGTGCCA AACAACCCCT CTTTTGTTTC CCACCGCATA
GTATTAGTAA GTAATACTAG TAACCCTAGT AGTAACTTTA GTGTACGGCA GCGCCTACCA CAAACACCAA TGCCATCACC
ACACTTTCAA CACTTCAACC CTACCAAAGC AAAACTCTCT ATATATCACC CAAACATCCC TATGTCTCTT TCTTTCTCTC
CATCACAAAC ACAAACCCAA CAACACCCTT TCTTCTTTCA AACCTTTTAT TTCTTCACCT TATATTATCA CATCTATTAA
TCTTCCACAC ACATATCATA TTCATATAGC CATATTTATT GCATGGACTG TTGAGATGTC TCGCACGTGC TCACAGTGCG
GGAACAACGG CCACAACTCA AGGACATGCA CCGACGGTGG TGCTGCTGTT TCCGGCGGCT CGTCTCCCCG GGAGAGCGGC
TTCATGCTGT TTGGCGTGCG AGTCACCGAG GGAATTTCCT CCTTCAGGAA GAGCGCTAGC ATGAACAACC TCTCTCAATA
CGACGCCGAT TCCAACACAG CCGACGCCGG GTACGCCTCC GACGACGTCG TTCACGCCTC CGGTCGCGCG CGCGAGCGCA
AGCGAGGTGT TCCTTGGACG GAGGAAGAGC ACAGACTGTT CCTGTTAGGG TTGCACAAAG TTGGAAAGGG AGATTGGAGA
GGAATTTCTA GAAACTTCGT CAAAACTCGC ACGCCAACTC AGGTCGCCAG TCACGCTCAG AAGTACTTCC TCCGTCGCCA
CAACCAGAAC CGCCGCCGCC GGAGATCTAG CCTCTTTGAC ATCACTACCG ATACGGTGAT GGAGTCTTCT ACTATAATGG
AAGAAGAACA AGTTCAGCAG GAAACGGCGG CGCTGCCTAT CCCCGCAGCA TATCCGCCGT CGCATTACGG CGGTTTGCCT
GGCGCAGGTT TTCCGATGAG TCTATCTCCA GTGGTTTTGC CGGCGAGCAG TGAGAGGCTA GCCAAGCCGA TTAGGCCGAC
GCCGATTTTG CCGGTCCCAC CGTCGTCGAA GATGGCTAGT TTGAACTTGA AAGAGAAAGC TTCTCCGACT AATCTCATAG
AGCCTTTACC GTTGTCGTTG AATCTTCCAT CGCCGACGCC GCGGTCACAG GATCAGTCAC CGGCGAGTAG TGACCACTCA
TCGCCGTCGT CGTCATCATC GGCTTTTCAG GTGATTTCTG CTGGGAAGTT CGGCGGCGGT GGGGACAGTA TCATCAGCGT
TGCTTGAAAA GAAGGAAACC TAAAAAAATT AGCGTCATTA AGTTACTATT AAGCAAGTAC GGTCGTGGAT AATTTGAATA
TGTAAATTAA TTTTACAAAG TCGGAGATGT ATCCAAGAGG GGGAAAATTG AAGATATGTG TTGGAGATTT ATTGATTACT
AAAGATAAAG ATAATATCGG TAGGAGGGAG GGGATATTTG AATCAATGAG TATGATCATA ATTATGATTT GGAGAAAAAA
AAAAAGAAAA AAAAGAAGAG TATGTTAGGC TATATAGGTA ATTAGTAAAT TAAATTGCTG GTTTGCATTG AATGTACAGG
TTTAGAAATG AATTAGATAG ATGGGTTGTC ACATTCTCTA GCTGTCGGGG GATTCTTGTT TCTATTTGTA TGGGGGAGTG
TGACATTGAA ATGATAGGGC ACCAGGTACT CTTTATATGC TATTGGTCTC GCTCTGTATT GCATTGCCAT TGGGGTCATT
AAAATATCAC TGCTAGCTTA GACAAACGAA TATATTATGC TCACCCTTCA ATTCTTAAGC ACATGCCATT CAATCACCAT

[show][hide][copy]CDS

>Vigan.10G076000.01
ATGTCTCGCA CGTGCTCACA GTGCGGGAAC AACGGCCACA ACTCAAGGAC ATGCACCGAC GGTGGTGCTG CTGTTTCCGG
CGGCTCGTCT CCCCGGGAGA GCGGCTTCAT GCTGTTTGGC GTGCGAGTCA CCGAGGGAAT TTCCTCCTTC AGGAAGAGCG
CTAGCATGAA CAACCTCTCT CAATACGACG CCGATTCCAA CACAGCCGAC GCCGGGTACG CCTCCGACGA CGTCGTTCAC
GCCTCCGGTC GCGCGCGCGA GCGCAAGCGA GGTGTTCCTT GGACGGAGGA AGAGCACAGA CTGTTCCTGT TAGGGTTGCA
CAAAGTTGGA AAGGGAGATT GGAGAGGAAT TTCTAGAAAC TTCGTCAAAA CTCGCACGCC AACTCAGGTC GCCAGTCACG
CTCAGAAGTA CTTCCTCCGT CGCCACAACC AGAACCGCCG CCGCCGGAGA TCTAGCCTCT TTGACATCAC TACCGATACG
GTGATGGAGT CTTCTACTAT AATGGAAGAA GAACAAGTTC AGCAGGAAAC GGCGGCGCTG CCTATCCCCG CAGCATATCC
GCCGTCGCAT TACGGCGGTT TGCCTGGCGC AGGTTTTCCG ATGAGTCTAT CTCCAGTGGT TTTGCCGGCG AGCAGTGAGA
GGCTAGCCAA GCCGATTAGG CCGACGCCGA TTTTGCCGGT CCCACCGTCG TCGAAGATGG CTAGTTTGAA CTTGAAAGAG
AAAGCTTCTC CGACTAATCT CATAGAGCCT TTACCGTTGT CGTTGAATCT TCCATCGCCG ACGCCGCGGT CACAGGATCA
GTCACCGGCG AGTAGTGACC ACTCATCGCC GTCGTCGTCA TCATCGGCTT TTCAGGTGAT TTCTGCTGGG AAGTTCGGCG
GCGGTGGGGA CAGTATCATC AGCGTTGCTT GA

[show][hide][copy]PROTEIN

>Vigan.10G076000.01
MSRTCSQCGN NGHNSRTCTD GGAAVSGGSS PRESGFMLFG VRVTEGISSF RKSASMNNLS QYDADSNTAD AGYASDDVVH
ASGRARERKR GVPWTEEEHR LFLLGLHKVG KGDWRGISRN FVKTRTPTQV ASHAQKYFLR RHNQNRRRRR SSLFDITTDT
VMESSTIMEE EQVQQETAAL PIPAAYPPSH YGGLPGAGFP MSLSPVVLPA SSERLAKPIR PTPILPVPPS SKMASLNLKE
KASPTNLIEP LPLSLNLPSP TPRSQDQSPA SSDHSSPSSS SSAFQVISAG KFGGGGDSII SVA*