GBrowse Details

Vigan.10G076900.01

Basic Information:
Name: Vigan.10G076900.01
Multiple alignment
Variant Information
Position: Chr10:8716637..8723201 (- strand)
Length: 6565
Functional Information:
Description: Similar to Uncharacterized protein. [G7JX88, Medicago truncatula]
InterPro: Protein of unknown function DUF1218 (IPR009606)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.86,6.36,20.75,8.84,27.73,49.03,19.52,21.25
Arabidopsis thaliana homolog: AT1G13380.1
Automatic updates:
Name: NM_001251142 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306644 (LOC100306644), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:8716637..8716847 (- strand)
Length: 211
Type: three_prime_UTR
Position: Chr10:8716848..8717115 (- strand)
Length: 268
Type: CDS
Position: Chr10:8717439..8717644 (- strand)
Length: 206
Type: CDS
Position: Chr10:8722821..8722922 (- strand)
Length: 102
Type: CDS
Position: Chr10:8722923..8723201 (- strand)
Length: 279
Type: five_prime_UTR


>Vigan.10G076900.01
GTCACACACC CACTTCAATC ATTCTTCTCT ACCCTCCAAA AGGAACGTAT GATACACTCT CTGTAATCAC GCGTGAGTCC
AACATTCTCC ATCTCTCTCA AGAAGCTTTA TTGAACAAAC ATCGCTTTAC ACTATTAGGC CGCGAATCAG CAAAAGCATT
CACTTTGTTC ACACTTTTTT CACTGCACCT TCTCTCTCTC TCACCCTCTC ACTCTCTCTC AACTCAGCTA CACACACAAA
CCCATTTTGG CAGAGGGAAG ACCTTCGCTG CAGCTAGAGA TGGCAGAGGG AAGAGGGTCC ACTCTGGTCC ACCTTTTGGT
CGTCGTGTTG AGTTTGGTTG CGTTTGGCTT CGCCATTGCC GCAGAGAGAA GACGAAGCGT CGGAACCATG TTCAAAATTG
AGAAAACAAA TGAAACATAT TGCAGCTACA GTTCAGATGT TGCGACTGGT TATGGAGTGG GTGCTTTCCT GTTTCTTCTT
TCAGGTGAAT CACTGCTAAT GGGAGTGACA AAGTGCATGT GCTTTGGGAG GCCCTTAACA CCTGGGGGAA ATAGAGCATG
GTCCATTATA TATTTTCTTT CCTCTTGGAT CACTTTTCTG GTGGCAGAAG CGTGTTTGAT AGCAGGTGCA ACCAAGAATG
CCTACCATAC CAAATACCGT GGAATGATTC TTGCTCAGAA CTTCTCGTGT GAAGCCTTGC GAAAAGGTGT TTTTGTTGCT
GGCGCAGTTT TCATTGTTGC AACCATGATT CTGAACGTAT ACTACTACAT GTACTTCACA AAGGCAACTA CCACACCAGT
TTCTCACAAG GCAAATCGGG TGAGCTCAAC AGTTGGAATG GCAGGATATG CATGATAACA AATTTAGTCT TAATTTCAAT
GGATGTCTCG ATGATTATCA CTAAAACGGT GGTTTTCATT TGGTTTTTCC TAGTAAATCG ATGTTTATAA TGTTCATGTG
GATGTTACTA GTCAGAAGCA AGCTATATAT ATTATAATTA GGTAAAGAGG GTCTCATCAT GTTGGTTTTC AGATAAACTT
GATATTCAAA GTGTGTAAAA TGTTTT

>Vigan.10G076900.01
ATGGCAGAGG GAAGAGGGTC CACTCTGGTC CACCTTTTGG TCGTCGTGTT GAGTTTGGTT GCGTTTGGCT TCGCCATTGC
CGCAGAGAGA AGACGAAGCG TCGGAACCAT GTTCAAAATT GAGAAAACAA ATGAAACATA TTGCAGCTAC AGTTCAGATG
TTGCGACTGG TTATGGAGTG GGTGCTTTCC TGTTTCTTCT TTCAGGTGAA TCACTGCTAA TGGGAGTGAC AAAGTGCATG
TGCTTTGGGA GGCCCTTAAC ACCTGGGGGA AATAGAGCAT GGTCCATTAT ATATTTTCTT TCCTCTTGGA TCACTTTTCT
GGTGGCAGAA GCGTGTTTGA TAGCAGGTGC AACCAAGAAT GCCTACCATA CCAAATACCG TGGAATGATT CTTGCTCAGA
ACTTCTCGTG TGAAGCCTTG CGAAAAGGTG TTTTTGTTGC TGGCGCAGTT TTCATTGTTG CAACCATGAT TCTGAACGTA
TACTACTACA TGTACTTCAC AAAGGCAACT ACCACACCAG TTTCTCACAA GGCAAATCGG GTGAGCTCAA CAGTTGGAAT
GGCAGGATAT GCATGA

>Vigan.10G076900.01
MAEGRGSTLV HLLVVVLSLV AFGFAIAAER RRSVGTMFKI EKTNETYCSY SSDVATGYGV GAFLFLLSGE SLLMGVTKCM
CFGRPLTPGG NRAWSIIYFL SSWITFLVAE ACLIAGATKN AYHTKYRGMI LAQNFSCEAL RKGVFVAGAV FIVATMILNV
YYYMYFTKAT TTPVSHKANR VSSTVGMAGY A*