GBrowse Details

Vigan.10G098500.01

Basic Information:
Name: Vigan.10G098500.01
Multiple alignment
Variant Information
Position: Chr10:11840673..11851288 (+ strand)
Length: 10616
Functional Information:
Description: Similar to Carbonic anhydrase. [V7CKL2, Phaseolus vulgaris]
GO: Biological Process: carbon utilization (GO:0015976)
Molecular Function: carbonate dehydratase activity (GO:0004089)
Molecular Function: zinc ion binding (GO:0008270)
InterPro: Carbonic anhydrase (IPR001765)
Carbonic anhydrase, prokaryotic-like, conserved site (IPR015892)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:11.34,1.08,6.52,71.95,3.40,17.17,33.56,14.44
Arabidopsis thaliana homolog: AT1G70410.2
Automatic updates:
Name: NM_001354879 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max carbonic anhydrase (LOC100810496), transcript variant 1, mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001354880 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max carbonic anhydrase (LOC100810496), transcript variant 2, mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:11840673..11840917 (+ strand)
Length: 245
Type: five_prime_UTR
Position: Chr10:11840918..11841061 (+ strand)
Length: 144
Type: CDS
Position: Chr10:11845578..11845639 (+ strand)
Length: 62
Type: CDS
Position: Chr10:11845846..11845986 (+ strand)
Length: 141
Type: CDS
Position: Chr10:11847002..11847050 (+ strand)
Length: 49
Type: CDS
Position: Chr10:11847638..11847754 (+ strand)
Length: 117
Type: CDS
Position: Chr10:11847872..11847925 (+ strand)
Length: 54
Type: CDS
Position: Chr10:11848760..11848845 (+ strand)
Length: 86
Type: CDS
Position: Chr10:11849856..11849961 (+ strand)
Length: 106
Type: CDS
Position: Chr10:11850632..11850796 (+ strand)
Length: 165
Type: CDS
Position: Chr10:11850797..11851288 (+ strand)
Length: 492
Type: three_prime_UTR


>Vigan.10G098500.01
ATACAACTTC ACCAATTTTC TGCTTTAATA TGTACTGCAT GTGGATTTGC CTTCAAAGTT TGCATTTTCC AACAAAGTTC
TGTCATGCCT TTTATACTTT GAGAATGTGT ATCAGAATTT TCAAACATGT TAAATAGTGT AACTGTTACT CAGACACAAG
ACTACTCAAC TTTTATATAA ACTTTATGCT GATTATTAAA ATTTTACTGT TTTTGAGCCC ACAAAGAAAT TAATTTTGTG
TGATTATGAA TTGCAAGTTG GGAAGTATTT TAAGAAGATT GGTTTGTGTG TGCATGACAG GGAAAAGAGG ATTGTGCAGT
GCAAACAGAA GCATGGCTGG TGCATTCAAA AAGTGTATGA TGCTCTGTTG CACGACCAAG ATTGACTCGA AGGAAGAGAT
GGCAGGAGAA TCATTCGGCG AAGCAATCGC AAAACTGACC AAGCTTCTCA GTGAAAAGGC TGAACTCGGC GACGTCGCCA
CCTTAAAGAT CTCGCAGCTG ACGGCGGAGC TTGAGGCTGC CGGTGCGAAG CGCTGTGTCC CGGAGGAGAG GATCAAAACG
GGCTTCATCA CCTTTAGGAA TGAGAAATTT TTGAGAAATC CTGATCTATA TGCCGACCTT GCCAAAGGCC AAAGCCCAAA
GTTTATGGTA TTTGCCTGCT CGGACTCGAG AGTTTGTCCA TCCCATATTC TGGATTTCCA ACCCGGTGAA GCCTTTGTGG
TCCGAAACAT TGCCAACATG GTTCCACCGT ATGATAAGAC AAAGTATTCA GGAGCTGGGG CAGCCATTGA ATATGCAGTC
GAGCATTTAA AGGTGGAGAA TATTGTAGTT ATTGGACACA GTTGCTGTGG TGGTATAAAG GGGCTCATGT CTATCCCAGA
TGATGGGACC ACTGCAAGTG AATTCATAGA GCAATGGGTC CAAATATGTA CACCAGCAAG GTCCAAGATT AAAACAGAAA
CAAGTGCATT AAGCTTCGAG GAGCAGTGCA CTAACTGTGA GAAGGAAGCT GTGAATGTGT CACTGGGGAA TCTGTTAAGT
TATCCTTTTG TTAGAGCTGG TGTGGAGAAC AAATCTCTAG CTTTGAAAGG AGCACATTAT GATTTCGTTA ATGGCACTTT
TGAACTCTGG GATTTGAACT ACAAGCTTTT GCCCTCTATA TCTATTTAAG ATTTCTCTTT TCAACAGTGA GTCTAGATTC
TTTGCTGGTT TTTTTTCAGT GCTGTTCTTT GTAGAAAATA AAAAATACGC TGATATTAAT ATATATTAAT TCTTTTTTAG
TTTATTTTAA AACATCAAAA TCAGTGTATT TTAAAGATTA AACATAAGAA CAGCACTGAA AAATTCAGTA AAAAATTTAC
TGCAAAGCTG CACTATATGT ACACTTTTGC TGAGGGTTTC CATAGAAAAG ATTCAGACAT TCAGAAAGAA TAATGGTCTG
TGAGGTAGTA ATAGTAGTAA CTAGTAAACT GGTTTTGATT TCCACCAAAG TATCATTATC ATCATCTCTG TTATGAATAA
TACATTACTG TTATTTATTT TCATTTTGGC TGATGTATCA ATGACTTTAT ATATCAGTTA TGACTTCCTA CTTTGATTTT
CTTTCTGAAC CTGATTCCAT GGATGGGAGG AACTTCTTAG AAAGTAATGT AAGTTATTCA T

>Vigan.10G098500.01
ATGAATTGCA AGTTGGGAAG TATTTTAAGA AGATTGGTTT GTGTGTGCAT GACAGGGAAA AGAGGATTGT GCAGTGCAAA
CAGAAGCATG GCTGGTGCAT TCAAAAAGTG TATGATGCTC TGTTGCACGA CCAAGATTGA CTCGAAGGAA GAGATGGCAG
GAGAATCATT CGGCGAAGCA ATCGCAAAAC TGACCAAGCT TCTCAGTGAA AAGGCTGAAC TCGGCGACGT CGCCACCTTA
AAGATCTCGC AGCTGACGGC GGAGCTTGAG GCTGCCGGTG CGAAGCGCTG TGTCCCGGAG GAGAGGATCA AAACGGGCTT
CATCACCTTT AGGAATGAGA AATTTTTGAG AAATCCTGAT CTATATGCCG ACCTTGCCAA AGGCCAAAGC CCAAAGTTTA
TGGTATTTGC CTGCTCGGAC TCGAGAGTTT GTCCATCCCA TATTCTGGAT TTCCAACCCG GTGAAGCCTT TGTGGTCCGA
AACATTGCCA ACATGGTTCC ACCGTATGAT AAGACAAAGT ATTCAGGAGC TGGGGCAGCC ATTGAATATG CAGTCGAGCA
TTTAAAGGTG GAGAATATTG TAGTTATTGG ACACAGTTGC TGTGGTGGTA TAAAGGGGCT CATGTCTATC CCAGATGATG
GGACCACTGC AAGTGAATTC ATAGAGCAAT GGGTCCAAAT ATGTACACCA GCAAGGTCCA AGATTAAAAC AGAAACAAGT
GCATTAAGCT TCGAGGAGCA GTGCACTAAC TGTGAGAAGG AAGCTGTGAA TGTGTCACTG GGGAATCTGT TAAGTTATCC
TTTTGTTAGA GCTGGTGTGG AGAACAAATC TCTAGCTTTG AAAGGAGCAC ATTATGATTT CGTTAATGGC ACTTTTGAAC
TCTGGGATTT GAACTACAAG CTTTTGCCCT CTATATCTAT TTAA

>Vigan.10G098500.01
MNCKLGSILR RLVCVCMTGK RGLCSANRSM AGAFKKCMML CCTTKIDSKE EMAGESFGEA IAKLTKLLSE KAELGDVATL
KISQLTAELE AAGAKRCVPE ERIKTGFITF RNEKFLRNPD LYADLAKGQS PKFMVFACSD SRVCPSHILD FQPGEAFVVR
NIANMVPPYD KTKYSGAGAA IEYAVEHLKV ENIVVIGHSC CGGIKGLMSI PDDGTTASEF IEQWVQICTP ARSKIKTETS
ALSFEEQCTN CEKEAVNVSL GNLLSYPFVR AGVENKSLAL KGAHYDFVNG TFELWDLNYK LLPSISI*