GBrowse Details

Vigan.10G099900.01

Basic Information:
Name: Vigan.10G099900.01
Multiple alignment
Variant Information
Position: Chr10:12031851..12035104 (+ strand)
Length: 3254
Functional Information:
Description: Similar to Spermidine synthase. [H2EIY6, Medicago sativa]
GO: Molecular Function: catalytic activity (GO:0003824)
InterPro: Spermidine/spermine synthases family (IPR001045)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:114.26,230.59,69.15,40.58,62.23,98.25,59.49,100.64
Arabidopsis thaliana homolog: AT1G23820.1, AT1G70310.1
Automatic updates:
Name: NM_001252932 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max spermidine synthase 1-like (LOC100792107), mRNA.
PubMed ID: 18927222 NCBI(pubmed)
Status: Known Variant
Name: NM_001254596 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max spermidine synthase 1-like (LOC100790506), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:12031851..12032073 (+ strand)
Length: 223
Type: five_prime_UTR
Position: Chr10:12032074..12032266 (+ strand)
Length: 193
Type: CDS
Position: Chr10:12032769..12032845 (+ strand)
Length: 77
Type: CDS
Position: Chr10:12032948..12033070 (+ strand)
Length: 123
Type: CDS
Position: Chr10:12033545..12033649 (+ strand)
Length: 105
Type: CDS
Position: Chr10:12033900..12033972 (+ strand)
Length: 73
Type: CDS
Position: Chr10:12034066..12034137 (+ strand)
Length: 72
Type: CDS
Position: Chr10:12034228..12034423 (+ strand)
Length: 196
Type: CDS
Position: Chr10:12034542..12034662 (+ strand)
Length: 121
Type: CDS
Position: Chr10:12034755..12034820 (+ strand)
Length: 66
Type: CDS
Position: Chr10:12034821..12035104 (+ strand)
Length: 284
Type: three_prime_UTR


>Vigan.10G099900.01
GAAAAAAACA AATTTAAAAA CTTAATTTGA CTAATTTACA TTATATGATA TTATTAAATT AGTTTTTATT TGTTTTTATC
TCCAAAGTTA CTACTTTTTT ATTTTATCAT TTATCTCTAA AGTTACCACC TTTTATTTAA TCATTCATCT CCATAACACC
TATATAAGGA GTAGAAGAGG GCAACACTAG TTCGTGCGTT CCCTACTCAC TTCAAAGAAG AACATGGCTG CGGAGAACAA
CAACAACGTC GTTCAGGTTT CAGAGTTACC CGTCAAGAGA CCCAGAGAAG AAGAACAAGA CGGCGGAGAG AATGGCGTTC
CCGACACCCT TTCAACGCTC CCCAATCACT CTCAACACTC TGGTATCTCT GCGGTTATTC CTGGTTGGTT CTCTGAAATC
AGCCCAATGT GGCCTGGGGA GGCGCATTCT TTGAAGGTGG AAAAGGTTCT GTTTGAAGGG AAGTCTGACT ATCAGAATGT
CATGGTCTTC CAGTCGTCCA CATATGGCAA GGTTCTTGTT CTTGATGGTG TCATTCAGCT TACAGAGAGG GATGAGTGTG
CCTACCAAGA GATGATAACA CATCTTCCTC TTTGCTCTAT TCCAAACCCC AAAAAGATTT TGGTTATTGG TGGAGGAGAT
GGTGGAGTCC TGCGTGAAAT AGCACGCTAT TCCTCAGTAG AGAAGATAGA CATTTGCGAA ATAGACAAGA TGGTTGTTGA
GGTCTCCAAA CAATTTTTTC CAGATGTAGC TGTAGGTTTC GAGGATCCAC GTGTGACACT TAATATTGGT GATGGAGTTG
CATATTTGAA GGCTGTTGAA GAAGGAACTT ATGATGCAGT TATAGTGGAT TCATCCGACC CTATTGGTCC TGCTCAAGAA
CTGTTTGAAA AGCCGTTTTT CGCATCGGTT GCAAGGGCTC TTCGTCCAGG AGGAGTTGTG TGTACTCAAG CAGAAAGTAT
ATGGCTTCAT ATGGATATCA TTGAGGGCAT TGTGGCCAAT TGTCGTCAGA TATTCAAAGG TTCTGTCAAC TATGCATGGA
CCACTGTTCC TACATACCCG AGTGGGATGA TTGGTTTTAT GCTTTGTTCA ACTGAGGGTC CTACTGTGGA CTTCAAGAAT
CCAGTGTATT CTATAGATGA GGATGATAGT CAAACTAGAC CATTGAAATT TTACAACTCT GAGCTTCATT CTGCGGCTTT
CTGTTTGCCA TCTTTTGCCA AGAGGGCTAT TTGTTCTAAA ACAAAGTGAG AACATTTTTC ATGAGACTGA AGAAGCAAGT
GTGGCTGCAG TGTTGCTTTT ACTGGATTGG TCCATCTGTC AATGAACTGT GGAATAAGTT AAGAGCTTCA AGATGATGAT
GATGATGACA TTTTGAAGAG CAACTTTTGT TTCATGAAAT GACTTGGTAG ATGACGGATT CAGTTCCTAG TAATTTACGT
TGTTGACAGT TTAGAACTTC AGTTGAAGAT TACTTTTTGT TTAATGCGTA TGTTTTTATC CCTTTGAAGT TAGTACCTTT
TAGTAGTTAG TAT

>Vigan.10G099900.01
ATGGCTGCGG AGAACAACAA CAACGTCGTT CAGGTTTCAG AGTTACCCGT CAAGAGACCC AGAGAAGAAG AACAAGACGG
CGGAGAGAAT GGCGTTCCCG ACACCCTTTC AACGCTCCCC AATCACTCTC AACACTCTGG TATCTCTGCG GTTATTCCTG
GTTGGTTCTC TGAAATCAGC CCAATGTGGC CTGGGGAGGC GCATTCTTTG AAGGTGGAAA AGGTTCTGTT TGAAGGGAAG
TCTGACTATC AGAATGTCAT GGTCTTCCAG TCGTCCACAT ATGGCAAGGT TCTTGTTCTT GATGGTGTCA TTCAGCTTAC
AGAGAGGGAT GAGTGTGCCT ACCAAGAGAT GATAACACAT CTTCCTCTTT GCTCTATTCC AAACCCCAAA AAGATTTTGG
TTATTGGTGG AGGAGATGGT GGAGTCCTGC GTGAAATAGC ACGCTATTCC TCAGTAGAGA AGATAGACAT TTGCGAAATA
GACAAGATGG TTGTTGAGGT CTCCAAACAA TTTTTTCCAG ATGTAGCTGT AGGTTTCGAG GATCCACGTG TGACACTTAA
TATTGGTGAT GGAGTTGCAT ATTTGAAGGC TGTTGAAGAA GGAACTTATG ATGCAGTTAT AGTGGATTCA TCCGACCCTA
TTGGTCCTGC TCAAGAACTG TTTGAAAAGC CGTTTTTCGC ATCGGTTGCA AGGGCTCTTC GTCCAGGAGG AGTTGTGTGT
ACTCAAGCAG AAAGTATATG GCTTCATATG GATATCATTG AGGGCATTGT GGCCAATTGT CGTCAGATAT TCAAAGGTTC
TGTCAACTAT GCATGGACCA CTGTTCCTAC ATACCCGAGT GGGATGATTG GTTTTATGCT TTGTTCAACT GAGGGTCCTA
CTGTGGACTT CAAGAATCCA GTGTATTCTA TAGATGAGGA TGATAGTCAA ACTAGACCAT TGAAATTTTA CAACTCTGAG
CTTCATTCTG CGGCTTTCTG TTTGCCATCT TTTGCCAAGA GGGCTATTTG TTCTAAAACA AAGTGA

>Vigan.10G099900.01
MAAENNNNVV QVSELPVKRP REEEQDGGEN GVPDTLSTLP NHSQHSGISA VIPGWFSEIS PMWPGEAHSL KVEKVLFEGK
SDYQNVMVFQ SSTYGKVLVL DGVIQLTERD ECAYQEMITH LPLCSIPNPK KILVIGGGDG GVLREIARYS SVEKIDICEI
DKMVVEVSKQ FFPDVAVGFE DPRVTLNIGD GVAYLKAVEE GTYDAVIVDS SDPIGPAQEL FEKPFFASVA RALRPGGVVC
TQAESIWLHM DIIEGIVANC RQIFKGSVNY AWTTVPTYPS GMIGFMLCST EGPTVDFKNP VYSIDEDDSQ TRPLKFYNSE
LHSAAFCLPS FAKRAICSKT K*