GBrowse Details

Vigan.10G103600.01

Basic Information:
Name: Vigan.10G103600.01
Multiple alignment
Variant Information
Position: Chr10:12678125..12681715 (+ strand)
Length: 3591
Functional Information:
Description: Similar to C-4 methyl sterol oxidase, putative. [B9S3D6, Ricinus communis]
GO: Biological Process: fatty acid biosynthetic process (GO:0006633)
Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: iron ion binding (GO:0005506)
Molecular Function: oxidoreductase activity (GO:0016491)
InterPro: Fatty acid hydroxylase (IPR006694)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:5.03,3.62,13.18,22.49,129.45,25.75,13.58,19.79
Arabidopsis thaliana homolog: AT1G07420.1
Automatic updates:
Name: NM_001253115 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative methylsterol monooxygenase DDB_G0269788-like (LOC100816716), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001254226 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative methylsterol monooxygenase DDB_G0269788-like (LOC100790183), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:12678125..12678196 (+ strand)
Length: 72
Type: five_prime_UTR
Position: Chr10:12678197..12678226 (+ strand)
Length: 30
Type: CDS
Position: Chr10:12679022..12679159 (+ strand)
Length: 138
Type: CDS
Position: Chr10:12679875..12680020 (+ strand)
Length: 146
Type: CDS
Position: Chr10:12680152..12680271 (+ strand)
Length: 120
Type: CDS
Position: Chr10:12680357..12680569 (+ strand)
Length: 213
Type: CDS
Position: Chr10:12680664..12680744 (+ strand)
Length: 81
Type: CDS
Position: Chr10:12680901..12680988 (+ strand)
Length: 88
Type: CDS
Position: Chr10:12680989..12681715 (+ strand)
Length: 727
Type: three_prime_UTR


>Vigan.10G103600.01
TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTA TCTCTCGCTT TCTCTCTCAC CGCCTCTCGT CTATGGCTTC
GCTTCTCGAA TCTGGCTGGC AGTACTTAAT CACACATTTC AGTGACTTTC AACTGGCGTG TTTGGGAAGT TTCTTTCTAC
ATGAGAGTGT TTTCTTCTTG TCTGGACTTC CCTTTATATG GCTTGAGAGG GCAGGGTGGA TGAGCAATTA CAAAATTCAG
GCAAAAAATA ATAGTCCTGC AGCTCAGGAG AAATGCATTG TTCGCCTGTT GCTTTACCAT TTTGGTGTCA ATCTACCTGT
TATGATTTTT TCATATCCCG TTTTCTCATA CATGGGCATG CGGAGTAGTC TTCCCCTACC GTCCTGGAAA ACAGTTCTAA
CTCAAATAAT CTTTTACTTC ATTTTGGAGG ACTTTATATT CTACTGGGGA CATAGAATAT TGCACACAAA ATGGCTATAC
AAGCATGTGC ACAGTGTTCA TCACGAGTAT GCTACACCGT TTGGTCTTAC TTCTGAATAT GCTCATCCTG CGGAGATACT
TTTCCTTGGG TTTGCTACCA TTTTTGGTCC TGCCATCACT GGGCCCCACT TGATAACTCT CTGGTTATGG ATGGTTCTGA
GAGTCCTAGA GACAGTTGAG GCTCATTGTG GATACCATTT TCCATGGAGT CTTTCGAACT TCCTTCCGTT GTATGGGGGA
GCTGATTTTC ACGACTATCA TCACCGTTTG CTGTACACGA AGTCTGGAAA TTATTCTTCG ACTTTCACTT ACATGGACTG
GATATTTGGA ACTGATGTAG GCTACAGAAA GTTGAAAGCA TTGAAGAGCA CACAAATTGA AGACAGTAGC GAGCTAAAGA
ACAATTAGAA TAAAATTTTT GGGAATATCT GGGGATGATT AGAAAGTTGA TTTGCAACTT AAGGGCATAT TTGAAAAAAT
GCCCTATCAA ATCCTTATGT GTTCTTGTGT TATTGTATTA GCTGGTCTTG TCTACAAGGT GTTGGTGGCT TTTTCTGGAC
ATTCATGCCC CGTTATAAAA AACTTCATTA GTGACAGTGA TTTCAATTTT GGGATGTTTC CCATTGGTGA TCCAATATTC
TTGATGATGC CCAAATTTCT CCTTACGCAG ATGAATGTTA TTTGTTTGAT ATAAGTATCA TTTGAATTGA ATGGAGTAAG
TGGCAATGGA GACAGAGAAG ATAACCTGGT TCCCACCGAC AATCCTGGAT AAATTGATCC TTCTTATCGA TTTGTTGATT
TTCTTTTAGT CTTGAATGTT ATTTCTCACA ATTGAAATAG GTGAGACCAT GTGCCTGATA AAGTTTTTCT TCTCACTAAA
ATACTAGGAA AGAGCGCTAG TGGCTGCTTA GCCTGCTTGG GTATACTCCT CAGAATGAAA GCAACTCCGG AGAAAAATGA
ACACAAATTT GTTATTTTTA ACAAATGAAC ACAATTAATT GTCTTTCTTT CTAGGGGTTT TTGTTAAGGT CACTACTGCA
ACATATTTGC TTTGTTTACT CATGACAAGC TTTCAATTTG AATCATTTGC TATCTACTAT TAAGAAACAA AGTATATTAT
TTACAAATTT AGAAG

>Vigan.10G103600.01
ATGGCTTCGC TTCTCGAATC TGGCTGGCAG TACTTAATCA CACATTTCAG TGACTTTCAA CTGGCGTGTT TGGGAAGTTT
CTTTCTACAT GAGAGTGTTT TCTTCTTGTC TGGACTTCCC TTTATATGGC TTGAGAGGGC AGGGTGGATG AGCAATTACA
AAATTCAGGC AAAAAATAAT AGTCCTGCAG CTCAGGAGAA ATGCATTGTT CGCCTGTTGC TTTACCATTT TGGTGTCAAT
CTACCTGTTA TGATTTTTTC ATATCCCGTT TTCTCATACA TGGGCATGCG GAGTAGTCTT CCCCTACCGT CCTGGAAAAC
AGTTCTAACT CAAATAATCT TTTACTTCAT TTTGGAGGAC TTTATATTCT ACTGGGGACA TAGAATATTG CACACAAAAT
GGCTATACAA GCATGTGCAC AGTGTTCATC ACGAGTATGC TACACCGTTT GGTCTTACTT CTGAATATGC TCATCCTGCG
GAGATACTTT TCCTTGGGTT TGCTACCATT TTTGGTCCTG CCATCACTGG GCCCCACTTG ATAACTCTCT GGTTATGGAT
GGTTCTGAGA GTCCTAGAGA CAGTTGAGGC TCATTGTGGA TACCATTTTC CATGGAGTCT TTCGAACTTC CTTCCGTTGT
ATGGGGGAGC TGATTTTCAC GACTATCATC ACCGTTTGCT GTACACGAAG TCTGGAAATT ATTCTTCGAC TTTCACTTAC
ATGGACTGGA TATTTGGAAC TGATGTAGGC TACAGAAAGT TGAAAGCATT GAAGAGCACA CAAATTGAAG ACAGTAGCGA
GCTAAAGAAC AATTAG

>Vigan.10G103600.01
MASLLESGWQ YLITHFSDFQ LACLGSFFLH ESVFFLSGLP FIWLERAGWM SNYKIQAKNN SPAAQEKCIV RLLLYHFGVN
LPVMIFSYPV FSYMGMRSSL PLPSWKTVLT QIIFYFILED FIFYWGHRIL HTKWLYKHVH SVHHEYATPF GLTSEYAHPA
EILFLGFATI FGPAITGPHL ITLWLWMVLR VLETVEAHCG YHFPWSLSNF LPLYGGADFH DYHHRLLYTK SGNYSSTFTY
MDWIFGTDVG YRKLKALKST QIEDSSELKN N*