GBrowse Details

Vigan.10G110800.01

Basic Information:
Name: Vigan.10G110800.01
Multiple alignment
Variant Information
Position: Chr10:15021045..15024196 (+ strand)
Length: 3152
Functional Information:
Description: Similar to SNARE associated Golgi protein. [V5N8P5, Phaseolus vulgaris]
InterPro: SNARE associated Golgi protein (IPR015414)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:98.31,34.05,41.22,53.80,14.10,49.72,53.86,29.67
Arabidopsis thaliana homolog: AT4G17790.1
Automatic updates:
Name: NM_001252706 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max SNARE-associated domain-containing protein (LOC100793859), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:15021045..15021116 (+ strand)
Length: 72
Type: five_prime_UTR
Position: Chr10:15021117..15021316 (+ strand)
Length: 200
Type: CDS
Position: Chr10:15022509..15022779 (+ strand)
Length: 271
Type: CDS
Position: Chr10:15022860..15023030 (+ strand)
Length: 171
Type: CDS
Position: Chr10:15023423..15023548 (+ strand)
Length: 126
Type: CDS
Position: Chr10:15023549..15024196 (+ strand)
Length: 648
Type: three_prime_UTR


>Vigan.10G110800.01
GTCTGTGTTA AACTCTTGTC TTTCTCTCTC TCCTCAAGAT AAGGCAGAGA AGAGAAGGAA AGAGAGAAGG AGATGGAGGG
TGCAAACACG GTGGTGGAGC AATCCGTACC AACGCCGTCC AAGTTTCCGT TGAGCTTTTG GGAAACCACG GTGGCTTCAA
CGGTGGCTTT GATTTTCGCT GTGGGTCTAG CCGGCGTGTA CCTCACCATG CCCGATTCCG ATTATAGCTT TCTGAAGCTA
CCCCGCACCC TCCAAGACCT TAAACTCCTC CGAGATAACC TTGAGAGCTA TACAAGTGAC TACACTGCAC AAGTCTTGGT
GGGATACTGC GTGGTATATA TTTTCATGCA GACTTTCATG ATTCCAGGGA CTGTTTTCAT GTCATTGCTT GCTGGAGCAC
TCTTTGGAGT CTTTAAAGGA ATGGCACTGG TTGTGTTCAC TGCTACTGCA GGAGCTTCTT CATGCTACTT CCTGTCTAAA
CTGATTGGAC GTCCAATTCT CTCCTCCCTC TGGCCTGAAA AGTTGAAATT CTTCCAAACC CAGGTGGCTA GAAGAAGAAA
GAGTTTGTTG AACTACATGC TTTTTCTGAG ATTGACTCCA ACCCTGCCCA ACACATTTAT TAATTTTGCT TCGCCAATTG
TGGATGTGCC TTATCATATC TTCTTCTTGG CAACTGTTAT TGGACTCATA CCCGCAGCTT ATGTCACTGT CAAGGCTGGG
TTAGCTCTTG GAGAGTTAAA ATCCATGGGG GATCTCTATG ATTTCAACTC AGTTGCTACC TTGTTCCTCA TTGGTGTTGT
GTCAGTTACA CCCACATTAA TGAACAAGAA CGAATCATAG CATTTTATAG GCCAAGAATC ATTGCTGTAT GATGGCCTTG
TTCTCCTGAC AGCTAATATC AGTTCAGTAT TTGTACAGAT CTCCAAAAGA AAAGAAAAAA AAAGCAATTT CATTGTGATT
CTCTGCAAAT AGATTATTCC AAATGCTGCA GTAGTTCAAG ACAAGCATAT GATTGGTTGG ATCTATGCTA GTGGCAAGAA
ACGAAGATTG GCTGAATTAG TTATGTACAT TATTCACGAG TTGATATGTG TAAAACATTC ACATATTGAA TGGTAGTTAT
TTTGTCATGT TTACATCAAC AAAAGATGTT TTCTTCATCT TTCCCATCAT TTGATTATTA CACATCAATC ACTGGTTCAC
TTTCCGCGTC TTTCGTATTA CAATCAATAT AAAGTACATG AAATCAGTGC ATCATGTGCA TTGGGGGGCA GGTAGGATAT
GGAACCTACT GCGCCAACCA CGAATATGAA GAAAAGTGTG TAAGCATGGG TTGCTATACT AAATATTTTA AAAGTTCACA
CTATACTAAA TATTTTAAAA GTTCACACTC TCAACTGAAA TTAATCTTTA TACTTGAACC AACTCATGTT CTTCTCAATC
AAGAATCTTG AGTTTTGGAA TGTATACTAT GTTTTAAATA GAATATCA

>Vigan.10G110800.01
ATGGAGGGTG CAAACACGGT GGTGGAGCAA TCCGTACCAA CGCCGTCCAA GTTTCCGTTG AGCTTTTGGG AAACCACGGT
GGCTTCAACG GTGGCTTTGA TTTTCGCTGT GGGTCTAGCC GGCGTGTACC TCACCATGCC CGATTCCGAT TATAGCTTTC
TGAAGCTACC CCGCACCCTC CAAGACCTTA AACTCCTCCG AGATAACCTT GAGAGCTATA CAAGTGACTA CACTGCACAA
GTCTTGGTGG GATACTGCGT GGTATATATT TTCATGCAGA CTTTCATGAT TCCAGGGACT GTTTTCATGT CATTGCTTGC
TGGAGCACTC TTTGGAGTCT TTAAAGGAAT GGCACTGGTT GTGTTCACTG CTACTGCAGG AGCTTCTTCA TGCTACTTCC
TGTCTAAACT GATTGGACGT CCAATTCTCT CCTCCCTCTG GCCTGAAAAG TTGAAATTCT TCCAAACCCA GGTGGCTAGA
AGAAGAAAGA GTTTGTTGAA CTACATGCTT TTTCTGAGAT TGACTCCAAC CCTGCCCAAC ACATTTATTA ATTTTGCTTC
GCCAATTGTG GATGTGCCTT ATCATATCTT CTTCTTGGCA ACTGTTATTG GACTCATACC CGCAGCTTAT GTCACTGTCA
AGGCTGGGTT AGCTCTTGGA GAGTTAAAAT CCATGGGGGA TCTCTATGAT TTCAACTCAG TTGCTACCTT GTTCCTCATT
GGTGTTGTGT CAGTTACACC CACATTAATG AACAAGAACG AATCATAG

>Vigan.10G110800.01
MEGANTVVEQ SVPTPSKFPL SFWETTVAST VALIFAVGLA GVYLTMPDSD YSFLKLPRTL QDLKLLRDNL ESYTSDYTAQ
VLVGYCVVYI FMQTFMIPGT VFMSLLAGAL FGVFKGMALV VFTATAGASS CYFLSKLIGR PILSSLWPEK LKFFQTQVAR
RRKSLLNYML FLRLTPTLPN TFINFASPIV DVPYHIFFLA TVIGLIPAAY VTVKAGLALG ELKSMGDLYD FNSVATLFLI
GVVSVTPTLM NKNES*