GBrowse Details

Vigan.10G112100.01

Basic Information:
Name: Vigan.10G112100.01
Multiple alignment
Variant Information
Position: Chr10:15324126..15327555 (- strand)
Length: 3430
Functional Information:
Description: Similar to zinc-binding protein. [Q0VJB4, Platanus acerifolia]
InterPro: Protein of unknown function DUF597 (IPR006734)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:45.28,72.32,87.88,65.47,11.02,16.49,82.93,27.92
Arabidopsis thaliana homolog: AT4G17900.1
Automatic updates:
Name: NM_001301430 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max PLATZ1 (LOC100797900), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:15324126..15325480 (- strand)
Length: 1355
Type: three_prime_UTR
Position: Chr10:15325481..15325714 (- strand)
Length: 234
Type: CDS
Position: Chr10:15326106..15326321 (- strand)
Length: 216
Type: CDS
Position: Chr10:15326736..15326933 (- strand)
Length: 198
Type: CDS
Position: Chr10:15327099..15327161 (- strand)
Length: 63
Type: CDS
Position: Chr10:15327162..15327555 (- strand)
Length: 394
Type: five_prime_UTR


>Vigan.10G112100.01
AATAAATGAA GGTAGGAGAG TGATTAAAGA AAATGATAAG ATGAGAGAGA GAGAGAGAGA GTTGTGAAAA ATGAGATGTT
AATATTTAAT GAAGATTAAA AAGGAAAGAA GGAGGTGGGT TCCTTACGCC CAACGCATCT TGGTGGTTCG GGTTCGGAGC
TAGGTTTGGG TGAAGACTTT GTGCGGATAA GAACGACCCC TACCCTCACT CGTTTTCTCT CTCTCTAAAA CGCCATCATC
TACCGCTTCC AAGTCCTACA AGAACCCATT CCCTCCCTCA TAGCCCCCAC TCTTCTCCAC TTCTCAAACT TCAAACTTCA
AACTTCAAAC TTCATCACTC TTCCCTCAAA CCACAAATCA CATTCTCTCC AAACAAACTC TCCCTCCGAC CAACATGGCT
ATTGAAAACC ATGACACCAC TGTCAGAGAA ATCAAGCCCA AGAACCGGAG AATCATGGGT GCTGGAGGTC CCGATGATGA
GGACAATAGA TGGCCACCAT GGTTGAAGCC ACTGCTCAAA GAGAGCTTCT TTGTTCAATG CAAGTTACAT GCTGATTCTC
ACAAGAGTGA ATGCAACATG TATTGCTTGG ACTGTATGAA CGGCCCTCTC TGCTCTCTCT GCCTCGCCCA CCACAAGGAT
CACCGTGCAA TCCAGATTAG GAGGTCCTCA TACCATGATG TGATCAGGGT TTCTGAGATT CAGAAGGTGT TGGACATCAC
TGGTGTCCAA ACCTACATTA TCAACAGCGC AAGGGTGGTG TTTTTGAACG AGAGGCCTCA GCCAAGGCCA GGAAAAGGGG
TCACAAACAC ATGTGAAGTC TGCGAGCGAA GCCTTCTTGA TTCTTACCGC TTCTGTTCTC TTGGTTGCAA GATTGTTGGG
ACATCTAAGA ACCCACAGAA GAAGAAGAAG CAGTCAACGG CAATGACATC AGATTCTGAG GATTCATACA GTAGCAACAG
CGTCCATGGC CTGCAGAAAA ACTGCAAAGT TCAGAGCTTC ACACCGTCCA CTCCACCTCC AACTTCGGTT AATTACAGAA
CTGCCAAGAG AAGAAAGGGA ATACCGCACC GAGCCCCAAT GGGGGGACTA ATCATAGAGT ATTAGATTGT GGGTATTTTT
CGGTTATTTG CTATAATGCC CTTGGATATA AATATAATGC TAATGCAAGT GTTTCGACGA GGTTTCACCG TTCCACTACT
CGAGCTTTTC TAGGCCAGTA TTGGAACTGT CACCTTCTGT TCTTTAATGT TTCCTGTAGC AGTTTCTAGC GTCTTGTATA
TATATATATA TATAATATAT ATATATATAT ATATATATAT ATATATATAA AGTCCAATAG AACTGGAAAA GGGTGAAGAA
GAAGTAGTGA AAATAAGACA CCTGTGAAAT AGTTGATGGT GCAGTGATCA AAACAATGGC GTGTAGCAAA ATAATAGGCA
AGGCTCTTTT CGACCTAGCT AAGATGATGA TAAGGACTTA TAGGTTTGGT TTCTAAGGTA ATTATACCTA AGTTTTGGGG
TAGAGGATGT ACATAATGGC TAAGTGAGTT GGGGATGAGG ACAAATGAAA TGATGACAAT GTACTTCTTG GAAAATAGGT
GGTATGTCTA AATTATATGA GAATAGCACA ATAAAGATCT ATATTATTGC AAATACTTTT CTCCTTTTTT ATTAATTAAT
TATAATTTCC CAGCATTAAA ATGTTACCTT TGTCTAGTGG CGGTGAATGG TGGTAGTGGC GAAGGTAATA CAAGCTTCGA
ACGAGTGGGT CCACTGCAGC CGGCTTAAAT GGGGAGGGTT CGTCGGCGTT TACACGTGTC AAACGTTGAT TGGGATTTGT
GAAAGCCAAG TTGTATTGGT TCTCGAAAAC AGAGAATTGG TCAGCCGCCT CTATTAAAAA GAAAAACGAT AATTCTATGC
GCGGTTCCCT ACTCTTGGAT CTGACGGATG ACATTGAGCA CTATTGACGG CTTCGATCTC TTGATGTTCT CTCGATCATG
GGGGTAGATT CCCCGAGGCA GAAATCGTAG GGCTTGGAGT GTTTGATCGA ACTTTTGAGT AGTGGGCGTG TAAAATGAAC
GTATTATTAT TAGCTAAAGC ATAGATGGGG TTTGTCGTAA ACAGAAGAGG TTAGTGCGAC TTATTGGGAA CTTTCTTGGC
TTGGCAAATT GTTGATGGGT CTAATAATGA GATAATAAAG TTACAGCTAT TAGTGGAGTC ATTCTAAACG TGTTTTTTTA
CCGCAAGGAC TTCGATCCTA CTCCCACTGA ACTAAAGCAT TTTTGTTAAA CTTCCTGAAT TTGGAAAAGA TATGTCATCC
CCTGCAAAGA GAAACAAAAT AATCACGGTC AGAGAGACCC CCATTTTAAT TGTTCTAACG TGAAATGTTT CCTGATGGAG
AATGCCTAAG ATTTTAAGGA AACTGTTTTG ACTTTTCATT TTCAATTAAT GTTTCTTAGA 

>Vigan.10G112100.01
ATGGCTATTG AAAACCATGA CACCACTGTC AGAGAAATCA AGCCCAAGAA CCGGAGAATC ATGGGTGCTG GAGGTCCCGA
TGATGAGGAC AATAGATGGC CACCATGGTT GAAGCCACTG CTCAAAGAGA GCTTCTTTGT TCAATGCAAG TTACATGCTG
ATTCTCACAA GAGTGAATGC AACATGTATT GCTTGGACTG TATGAACGGC CCTCTCTGCT CTCTCTGCCT CGCCCACCAC
AAGGATCACC GTGCAATCCA GATTAGGAGG TCCTCATACC ATGATGTGAT CAGGGTTTCT GAGATTCAGA AGGTGTTGGA
CATCACTGGT GTCCAAACCT ACATTATCAA CAGCGCAAGG GTGGTGTTTT TGAACGAGAG GCCTCAGCCA AGGCCAGGAA
AAGGGGTCAC AAACACATGT GAAGTCTGCG AGCGAAGCCT TCTTGATTCT TACCGCTTCT GTTCTCTTGG TTGCAAGATT
GTTGGGACAT CTAAGAACCC ACAGAAGAAG AAGAAGCAGT CAACGGCAAT GACATCAGAT TCTGAGGATT CATACAGTAG
CAACAGCGTC CATGGCCTGC AGAAAAACTG CAAAGTTCAG AGCTTCACAC CGTCCACTCC ACCTCCAACT TCGGTTAATT
ACAGAACTGC CAAGAGAAGA AAGGGAATAC CGCACCGAGC CCCAATGGGG GGACTAATCA TAGAGTATTA G

>Vigan.10G112100.01
MAIENHDTTV REIKPKNRRI MGAGGPDDED NRWPPWLKPL LKESFFVQCK LHADSHKSEC NMYCLDCMNG PLCSLCLAHH
KDHRAIQIRR SSYHDVIRVS EIQKVLDITG VQTYIINSAR VVFLNERPQP RPGKGVTNTC EVCERSLLDS YRFCSLGCKI
VGTSKNPQKK KKQSTAMTSD SEDSYSSNSV HGLQKNCKVQ SFTPSTPPPT SVNYRTAKRR KGIPHRAPMG GLIIEY*