GBrowse Details

Vigan.10G112900.01

Basic Information:
Name: Vigan.10G112900.01
Multiple alignment
Variant Information
Position: Chr10:16350979..16355255 (+ strand)
Length: 4277
Functional Information:
Description: Similar to Uncharacterized protein. [I1J4T4, Glycine max]
GO: Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Biological Process: response to heat (GO:0009408)
Cellular Component: nucleus (GO:0005634)
Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700)
Molecular Function: sequence-specific DNA binding (GO:0043565)
InterPro: Heat shock factor (HSF)-type, DNA-binding (IPR000232)
Winged helix-turn-helix DNA-binding domain (IPR011991)
Heat shock transcription factor, plant (IPR027709)
Heat shock transcription factor family (IPR027725)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:37.85,29.41,8.31,11.57,10.09,10.57,17.52,10.78
Automatic updates:
Name: NM_001353422 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max heat stress transcription factor 2 (HSF-02), mRNA.
PubMed ID: 25416131 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr10:16350979..16351230 (+ strand)
Length: 252
Type: five_prime_UTR
Position: Chr10:16351231..16351467 (+ strand)
Length: 237
Type: CDS
Position: Chr10:16353478..16354710 (+ strand)
Length: 1233
Type: CDS
Position: Chr10:16354711..16355255 (+ strand)
Length: 545
Type: three_prime_UTR


>Vigan.10G112900.01
TATAAATATG ATGTAGGTAT GTTGGGAGGG TACAGAATGA GTAATTGGAG GACGCAAAGT CCTTCATTCA ATCCATTTCC
TGTTTCTCTT CAAACCCACT CCTTTTTCTT TTCTTCTCAT TCTCAAATCT AATTAATTCA ATTCCTCTCT CTTCTCCAAC
AACTTAGGGT TTCTTTTTTT CAAACAATGC CACGCATATT TCCCTAAATA CCCTATTTTT TAGCCTTTTC TACTTAAGTT
CAATTTCGCG ACATGGATAG CGGTGCGTCC GCTCCGACGG CGCCGATTCC GAACGCCAAC GCGCCGCCGC CATTTCTGAG
CAAGACTTAT GACATGGTCG AAGACCCTTC CACCGACGCG ATCGTGTCAT GGAGCGCAAC CAACAACAGC TTCATCGTGT
GGGACCCACC CGAATTTGCC AGGGACCTTT TGCCCAAATA CTTCAAACAC AACAACTTCT CCAGCTTCGT TAGACAGTTA
AACACTTATG GTTTCAGAAA GGTTGATCCA GATCGTTGGG AATTTGCAAA TGAGGGTTTT TTGAGGGGTC AAAAGCACTT
GCTTAGGAAT ATAACACGAA GAAAACCTGC CCATGGTCAA AATCATCAAC AGGCTCAGCA ACCCCATGGA CAGAGTTCAT
CAGTAGGGGC ATGTGTTGAA GTCGGAAAGT TTGGGCTTGA GGAAGAGGTT GAGAGGCTTA AAAGAGATAA GAATGTGCTC
ATGCAAGAGC TTGTGAGATT GAGGCAGCAG CAACAGACCA CTGATAACCA GTTGCAAACA ATGGTTCAGC GCCTTCAGGG
AATGGAGCAA CGACAGCAGC AAATGATGTC ATTCCTTGCG AAAGCTGTTC AGAGCCCTGG ATTCTTTGCT CAGTTTGTAC
AACAAAATGA GAGCAATAGG CGCATAAGTG AAGTCAACAA AAAGCGTAGG CTCAAGCAGG AAGGTATTGC AGAAACAGTG
AGTGCTGCTA CTCCAGATGG ACAAATCGTT AAATATCAAC CTCTGGCGAA TGAAGCTGCA AAAGCCATGC TTAAGCAGAT
CATGAAATGG GATACTTCTC GTGTAGAATC TTTTAATAAA AACCCCGAGG AGTACATCAT TGGTGATGCT TCATCATCTT
CCAGTGGAAT GGACAGTAGT GGCTCTTCAG GCTGGACTTC CGGAGTCACT CTTAAGGAGG TATCTCCAGC TTCGGTGCAG
TCTTCACACG TTCCAGCTGC TACTGGCACC CAAGGGCATG TCCGCCCGAC TGTTAAACCC GAATTTCCGT CTGTACCACA
AGCAGTAGCT TCTGAAAATG TTACAAAGGA TGGAGGACAT GGTGTGCCTT CTATCCCCGT TTCTCAAGCA GATATGGTGA
TCCCTGATCT TCCTCCAATA ACAGAGATGG TGACAGGAAA TATGCTTGAT ATTCCCGAAG AAAATTATAT GGCAACTGAA
TCGGATGAGG GATATATGGA TCCTTCACTG GGCGATGCCG GGTCATTTCC CATTGATTTT GAGGTCATTT CACCTGATAA
CATTGATGAT TTCTTAGGAA ATCCTTCTAT TTGGGATGAA ATTTTGCAAA CTCCAGTTCC AGAGGATATC GACACCAATA
TTGCCGATGT ATCCAACGGG AATGAGGTCC AGTCAACGGA AAATGGATGG AGCAAAACTC AACGTATGGA TCACCTTACA
GAGCAGATGG GTCTTCTTTC TTCTGATACA AAACGAGTTT GATTATCTAT GAAATTTATA TTAATCTTTC ATTTTGTCCA
AGGCCTGACC CAAACAATAC ACGACTGTAG TGATGTCTAT ATTATATATA ATTACACTCC CACTTGGTCA CTGAAAGTCA
ATGTTTCTCG TTTGGTCGTC TATGGATTTA GTTTGTCCTG CATTTAAAGC AAAATCTAAC TAACTATATC ATATTTGCAT
TTACATTGAT TTTTCATTTG CTTTGCGTTG AAAACAACTT ACGGATTTAT GGCCTTGTCG TGGACCACTT GGGGAGTGTT
TCTGGTTATC TAATCAGTTT TTCCAATGTC ATAGGCATTG GGTGAGGTTG AGTTATGTGA ATTCATTAAG CTGCTTGCCG
TTTGTTTCTT GGATTCTTAT TTGTCCTCTC TATGGTTATG TTTCAGCTAT TGGAAAATAT AAGGAATGAT ATTGAAAGCC
ATTAGTCACC ACCGTTGGAA GAAATTGTTT ATGATATAAG ATGACTCGTA AAAGGAGTAT GATTGAGTTG ATTGCACATT
TGAATTAACA CTTATTTTAA GAAAAGA

>Vigan.10G112900.01
ATGGATAGCG GTGCGTCCGC TCCGACGGCG CCGATTCCGA ACGCCAACGC GCCGCCGCCA TTTCTGAGCA AGACTTATGA
CATGGTCGAA GACCCTTCCA CCGACGCGAT CGTGTCATGG AGCGCAACCA ACAACAGCTT CATCGTGTGG GACCCACCCG
AATTTGCCAG GGACCTTTTG CCCAAATACT TCAAACACAA CAACTTCTCC AGCTTCGTTA GACAGTTAAA CACTTATGGT
TTCAGAAAGG TTGATCCAGA TCGTTGGGAA TTTGCAAATG AGGGTTTTTT GAGGGGTCAA AAGCACTTGC TTAGGAATAT
AACACGAAGA AAACCTGCCC ATGGTCAAAA TCATCAACAG GCTCAGCAAC CCCATGGACA GAGTTCATCA GTAGGGGCAT
GTGTTGAAGT CGGAAAGTTT GGGCTTGAGG AAGAGGTTGA GAGGCTTAAA AGAGATAAGA ATGTGCTCAT GCAAGAGCTT
GTGAGATTGA GGCAGCAGCA ACAGACCACT GATAACCAGT TGCAAACAAT GGTTCAGCGC CTTCAGGGAA TGGAGCAACG
ACAGCAGCAA ATGATGTCAT TCCTTGCGAA AGCTGTTCAG AGCCCTGGAT TCTTTGCTCA GTTTGTACAA CAAAATGAGA
GCAATAGGCG CATAAGTGAA GTCAACAAAA AGCGTAGGCT CAAGCAGGAA GGTATTGCAG AAACAGTGAG TGCTGCTACT
CCAGATGGAC AAATCGTTAA ATATCAACCT CTGGCGAATG AAGCTGCAAA AGCCATGCTT AAGCAGATCA TGAAATGGGA
TACTTCTCGT GTAGAATCTT TTAATAAAAA CCCCGAGGAG TACATCATTG GTGATGCTTC ATCATCTTCC AGTGGAATGG
ACAGTAGTGG CTCTTCAGGC TGGACTTCCG GAGTCACTCT TAAGGAGGTA TCTCCAGCTT CGGTGCAGTC TTCACACGTT
CCAGCTGCTA CTGGCACCCA AGGGCATGTC CGCCCGACTG TTAAACCCGA ATTTCCGTCT GTACCACAAG CAGTAGCTTC
TGAAAATGTT ACAAAGGATG GAGGACATGG TGTGCCTTCT ATCCCCGTTT CTCAAGCAGA TATGGTGATC CCTGATCTTC
CTCCAATAAC AGAGATGGTG ACAGGAAATA TGCTTGATAT TCCCGAAGAA AATTATATGG CAACTGAATC GGATGAGGGA
TATATGGATC CTTCACTGGG CGATGCCGGG TCATTTCCCA TTGATTTTGA GGTCATTTCA CCTGATAACA TTGATGATTT
CTTAGGAAAT CCTTCTATTT GGGATGAAAT TTTGCAAACT CCAGTTCCAG AGGATATCGA CACCAATATT GCCGATGTAT
CCAACGGGAA TGAGGTCCAG TCAACGGAAA ATGGATGGAG CAAAACTCAA CGTATGGATC ACCTTACAGA GCAGATGGGT
CTTCTTTCTT CTGATACAAA ACGAGTTTGA 

>Vigan.10G112900.01
MDSGASAPTA PIPNANAPPP FLSKTYDMVE DPSTDAIVSW SATNNSFIVW DPPEFARDLL PKYFKHNNFS SFVRQLNTYG
FRKVDPDRWE FANEGFLRGQ KHLLRNITRR KPAHGQNHQQ AQQPHGQSSS VGACVEVGKF GLEEEVERLK RDKNVLMQEL
VRLRQQQQTT DNQLQTMVQR LQGMEQRQQQ MMSFLAKAVQ SPGFFAQFVQ QNESNRRISE VNKKRRLKQE GIAETVSAAT
PDGQIVKYQP LANEAAKAML KQIMKWDTSR VESFNKNPEE YIIGDASSSS SGMDSSGSSG WTSGVTLKEV SPASVQSSHV
PAATGTQGHV RPTVKPEFPS VPQAVASENV TKDGGHGVPS IPVSQADMVI PDLPPITEMV TGNMLDIPEE NYMATESDEG
YMDPSLGDAG SFPIDFEVIS PDNIDDFLGN PSIWDEILQT PVPEDIDTNI ADVSNGNEVQ STENGWSKTQ RMDHLTEQMG
LLSSDTKRV*