GBrowse Details

Vigan.10G115300.01

Basic Information:
Name: Vigan.10G115300.01
Multiple alignment
Variant Information
Position: Chr10:16697271..16700410 (+ strand)
Length: 3140
Functional Information:
Description: Similar to Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1. [V7CLM9, Phaseolus vulgaris]
GO: Cellular Component: oligosaccharyltransferase complex (GO:0008250)
Cellular Component: integral to membrane (GO:0016021)
Molecular Function: dolichyl-diphosphooligosaccharide-protein glycotransferase activity (GO:0004579)
InterPro: DAD/Ost2 (IPR003038)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:19.07,23.60,36.70,22.45,47.11,79.01,54.32,26.49
Arabidopsis thaliana homolog: AT1G32210.1
Automatic updates:
Name: NM_001249297 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 (DAD1), mRNA.
PubMed ID: 30800138 NCBI(pubmed)
Status: Known Variant
Name: NM_001249390 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306016 (LOC100306016), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:16697271..16697436 (+ strand)
Length: 166
Type: five_prime_UTR
Position: Chr10:16697437..16697520 (+ strand)
Length: 84
Type: CDS
Position: Chr10:16697609..16697656 (+ strand)
Length: 48
Type: CDS
Position: Chr10:16698826..16698913 (+ strand)
Length: 88
Type: CDS
Position: Chr10:16699114..16699157 (+ strand)
Length: 44
Type: CDS
Position: Chr10:16699441..16699524 (+ strand)
Length: 84
Type: CDS
Position: Chr10:16699525..16700410 (+ strand)
Length: 886
Type: three_prime_UTR


>Vigan.10G115300.01
TTTTTTTTAA GTGGGTTAGG GCCTAAGCCC AAGAGACCTA AAAAATGGAA ATTTTGGGAA GTGATTTGGC AGAGACGACT
TGAGAGTAGT CTGCGTTGAA TTTTGGAGTT TAGAGAAGAG AGGAGGGTTT CTGTTGTGCA TTGCCAAATC GCGAAGATCT
GAGAGAATGG CGAGGTCTAG CAGCAAGGAT GCACAAGACC TTTTCCGCGC TCTTTGGTCT GCGTATGCTG CAACTCCTAC
GAATCTCAAG ATCATTGACC TCTACGTCAT GTTCGCTGTT TTCACCGCTC TCATCCAGGT AGTTTACATA GCTTTGGTGG
GATCATTTCC TTTTAACTCC TTCCTATCAG GAGTGCTCTC TTGTGTTGGA ACTGCTGTTC TTGCTGTTTG TCTCAGGATC
CAAGTGAATA AAGAGAATAA GGAATTCAAG GATCTTGCAC CTGAGCGAGC TTTTGCAGAT TTTGTTCTCT GTAATTTGGT
GCTTCATTTG GTGATCATGA ACTTCCTTGG TTAATTTTGG TTCATATGGC TGTTGTGGGT TTTGATTGAA CTCTTGGATA
ATAAAAAGTA ATAGCAATAT ACCCAGACTT TTGTAATAGT ATTTATAGAC AGTAACTTCC AACTAACTGC TTTAGGATTT
TGTTGATTCC CCCATTCTGG GGTCTCTGTT TTAATTGTAG AGATCTTTTT CATATTTTGA AATTTAAGCT ACTTTTGAAT
GGTGAGTTAC AGAAGTTATT ATTCTCATGG AAATCTAAAT CTGAGTACTA CCAAAAACAC TGCCTGTCTT TCTCAATCAC
AATGAATCTA TACATTTTTT GTGAGGGCAA ATTTTCAGGC ATGACGGGAC ACCAAGGAAT ACAGGATATA AAGGGTGAGA
TGAGTGGGTA GATTAATTGA TACATTGCAG CTGATGGCAA GGCCACGAGA AAGAGCAGAC GAAAAACTGT GTTGTGTTAT
TACCCCATGG CATGATATAC TGGTATGAAT ATGAAAACAA TAAGTTGCAT GTGCGACCAT GAACCAGGAT TTATGACACA
TTACTGAGCA ATTCATCAGT TCTTTTGTCC TTCACCTAAC CTCTTGTTTG CTCCCATGGT TTCTTTAATG TGTCAATTCC
ACCATTGGCT TCTTCGCCAA CTTTATCGCC AACTTTATAT TTCCCTATCG ATTCTAGTTG ATGAGATGTG GAGATCGCAA
AAAACATTTT GTAGGTGTCA GTCTAGCCTG ATCCTGGTAT CATCAAGCTG TTGTCATCAA TGAATTTTGT GAATTGTTTC
ATCTATACAC AAAAGTTATT GATTTGTCAA CTTCACGGGC GACAAGAAAG GCAAAGCAAT CTTGAACAGG GTTAGCCAGC
TCCACTTTAA ATATAGTTTT GGCGTCTTCC TCCTTAAATA 

>Vigan.10G115300.01
ATGGCGAGGT CTAGCAGCAA GGATGCACAA GACCTTTTCC GCGCTCTTTG GTCTGCGTAT GCTGCAACTC CTACGAATCT
CAAGATCATT GACCTCTACG TCATGTTCGC TGTTTTCACC GCTCTCATCC AGGTAGTTTA CATAGCTTTG GTGGGATCAT
TTCCTTTTAA CTCCTTCCTA TCAGGAGTGC TCTCTTGTGT TGGAACTGCT GTTCTTGCTG TTTGTCTCAG GATCCAAGTG
AATAAAGAGA ATAAGGAATT CAAGGATCTT GCACCTGAGC GAGCTTTTGC AGATTTTGTT CTCTGTAATT TGGTGCTTCA
TTTGGTGATC ATGAACTTCC TTGGTTAA

>Vigan.10G115300.01
MARSSSKDAQ DLFRALWSAY AATPTNLKII DLYVMFAVFT ALIQVVYIAL VGSFPFNSFL SGVLSCVGTA VLAVCLRIQV
NKENKEFKDL APERAFADFV LCNLVLHLVI MNFLG*