GBrowse Details

Vigan.10G115700.01

Basic Information:
Name: Vigan.10G115700.01
Multiple alignment
Variant Information
Position: Chr10:16800143..16803241 (- strand)
Length: 3099
Functional Information:
Description: Similar to Xyloglucan endotransglucosylase/hydrolase. [V7CJ88, Phaseolus vulgaris]
GO: Biological Process: carbohydrate metabolic process (GO:0005975)
Biological Process: cellular glucan metabolic process (GO:0006073)
Cellular Component: cell wall (GO:0005618)
Cellular Component: apoplast (GO:0048046)
Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553)
Molecular Function: xyloglucan:xyloglucosyl transferase activity (GO:0016762)
InterPro: Glycoside hydrolase, family 16 (IPR000757)
Glycoside hydrolase, family 16, active site (IPR008263)
Concanavalin A-like lectin/glucanases superfamily (IPR008985)
Xyloglucan endo-transglycosylase, C-terminal (IPR010713)
Concanavalin A-like lectin/glucanase, subgroup (IPR013320)
Xyloglucan endotransglucosylase/hydrolase (IPR016455)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:36.40,1.34,75.98,119.90,6.36,42.68,41.53,28.05
Arabidopsis thaliana homolog: AT1G32170.1
Automatic updates:
Name: NM_001255794 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max probable xyloglucan endotransglucosylase/hydrolase protein 30-like (LOC100800720), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:16800143..16800429 (- strand)
Length: 287
Type: three_prime_UTR
Position: Chr10:16800430..16800952 (- strand)
Length: 523
Type: CDS
Position: Chr10:16801989..16802197 (- strand)
Length: 209
Type: CDS
Position: Chr10:16802733..16802833 (- strand)
Length: 101
Type: CDS
Position: Chr10:16802962..16803169 (- strand)
Length: 208
Type: CDS
Position: Chr10:16803170..16803241 (- strand)
Length: 72
Type: five_prime_UTR


>Vigan.10G115700.01
AGGGAGAAAA GAAAGGGTGG AGAGAGAAAA ACAGAAGAAG AAGAAGAAGA GAGAAACTGA AATAAAATTA GTATGGATCA
TATGTTACGT TGTGTTGGGT CAATACCCAA ACTTTCGTTT CTTTTGCTAC TTTCTCTGCT TCTCTTCAGT TTCGTTAACG
CAGCCTTCGA CCTCGCTACT ATACCCTTCA AGGATGGTTT TTCTCCGCTC TTCGGAGATA GCAACGTTGT CCGCTCCGCC
GATGGCAACG GCGTACAACT CCTCCTCGAT CGCTACACAG GTTCGGGTTT TATATCGTCT AATATGTACA ACTATGGATT
CTTCAGCGCC AGAATAAAGT TACCGTCGAA TTATACTGCC GGTCTTTGCG TGGCCTTTTA TACATCAAAC GGTGATGTGT
TCGAGAAGTC GCACGATGAG TTGGACTTTG AATTCCTTGG AAACATCGCC GGAAAACCGT GGCGGTTTCA GACGAACTTA
TACGGCAACG GCAGTACGAA CCGTGGGCGC GAGGAGCGTT ACCGTTTGTG GTTCGATCCG ACGAAAGAAT ACCACAGATA
CAGCATCCTT TGGACAGCGA AGAATGTGAT TTTTTACGTT GACGAAGTTC CAATTAGAGA AGTGCTACGA AGTGAGAAAA
TGGGAGGTGA TTACCCATCG AAGCCGATGT CACTGTATGC GACCATATGG GATGCATCAA ATTGGGCAAC ATCTGGTGGT
AAATACAAAG TAAACTATAA GTATGCACCT TTTGTCACCC AATTTAAGGA CCTAGTCCTT AAGGGTTGCT CCGTCGACCC
CGTCCAAGAG ATCTTAGACC GCCAAGGTTG CTACGACCAA CACGAGGATC TCGAGGCTCA AGACTACGCC GCCGTCACTC
CCATGCGCCG CCTCGCCATG CGGCGGTTCC GCCAACGTTA CATGTACTAT TCGTATTGCT ATGACACATT ACGGTACAAC
GTGCCACCAC CCGAGTGTGT CATTGTACCC TCGGAGAAAC AAAGGTTTAA GGAGACCGGG AGGTTGAGAT TCGGCGGCAG
CCACCGCCGG CAGTCTCGAC GGAAGAGCCG TACAACTAAT GCGGTGGTTG ATACCGATGA GGGTGATATG TGATTATTGA
AATACTGAGA TGTATATAAT AGTGTCCATT TTTTATGGCT TTATTATTTG TGGGTATTTT GAGATAATAT TTATTTGTTG
AGAGGCATAA ATAAACTATA GTCATTATAT CTGTTTTTTA TTTTTATTTT TAATGAATGT ATTTTGGTGT TATGCTTTGT
GTTAGTATAT ATATGGCTTG ATTAGTTGGT GGAGAATATA TCGATGAGTG CGCGAAAGAA TAAGTCCAAA TATTTTGTGT
GTCAAAAAAT GCATGGCTGG TCATTCATCA TGTTGCCTTG 

>Vigan.10G115700.01
ATGGATCATA TGTTACGTTG TGTTGGGTCA ATACCCAAAC TTTCGTTTCT TTTGCTACTT TCTCTGCTTC TCTTCAGTTT
CGTTAACGCA GCCTTCGACC TCGCTACTAT ACCCTTCAAG GATGGTTTTT CTCCGCTCTT CGGAGATAGC AACGTTGTCC
GCTCCGCCGA TGGCAACGGC GTACAACTCC TCCTCGATCG CTACACAGGT TCGGGTTTTA TATCGTCTAA TATGTACAAC
TATGGATTCT TCAGCGCCAG AATAAAGTTA CCGTCGAATT ATACTGCCGG TCTTTGCGTG GCCTTTTATA CATCAAACGG
TGATGTGTTC GAGAAGTCGC ACGATGAGTT GGACTTTGAA TTCCTTGGAA ACATCGCCGG AAAACCGTGG CGGTTTCAGA
CGAACTTATA CGGCAACGGC AGTACGAACC GTGGGCGCGA GGAGCGTTAC CGTTTGTGGT TCGATCCGAC GAAAGAATAC
CACAGATACA GCATCCTTTG GACAGCGAAG AATGTGATTT TTTACGTTGA CGAAGTTCCA ATTAGAGAAG TGCTACGAAG
TGAGAAAATG GGAGGTGATT ACCCATCGAA GCCGATGTCA CTGTATGCGA CCATATGGGA TGCATCAAAT TGGGCAACAT
CTGGTGGTAA ATACAAAGTA AACTATAAGT ATGCACCTTT TGTCACCCAA TTTAAGGACC TAGTCCTTAA GGGTTGCTCC
GTCGACCCCG TCCAAGAGAT CTTAGACCGC CAAGGTTGCT ACGACCAACA CGAGGATCTC GAGGCTCAAG ACTACGCCGC
CGTCACTCCC ATGCGCCGCC TCGCCATGCG GCGGTTCCGC CAACGTTACA TGTACTATTC GTATTGCTAT GACACATTAC
GGTACAACGT GCCACCACCC GAGTGTGTCA TTGTACCCTC GGAGAAACAA AGGTTTAAGG AGACCGGGAG GTTGAGATTC
GGCGGCAGCC ACCGCCGGCA GTCTCGACGG AAGAGCCGTA CAACTAATGC GGTGGTTGAT ACCGATGAGG GTGATATGTG
A

>Vigan.10G115700.01
MDHMLRCVGS IPKLSFLLLL SLLLFSFVNA AFDLATIPFK DGFSPLFGDS NVVRSADGNG VQLLLDRYTG SGFISSNMYN
YGFFSARIKL PSNYTAGLCV AFYTSNGDVF EKSHDELDFE FLGNIAGKPW RFQTNLYGNG STNRGREERY RLWFDPTKEY
HRYSILWTAK NVIFYVDEVP IREVLRSEKM GGDYPSKPMS LYATIWDASN WATSGGKYKV NYKYAPFVTQ FKDLVLKGCS
VDPVQEILDR QGCYDQHEDL EAQDYAAVTP MRRLAMRRFR QRYMYYSYCY DTLRYNVPPP ECVIVPSEKQ RFKETGRLRF
GGSHRRQSRR KSRTTNAVVD TDEGDM*