GBrowse Details

Vigan.10G116900.01

Basic Information:
Name: Vigan.10G116900.01
Multiple alignment
Variant Information
Position: Chr10:17010439..17016068 (- strand)
Length: 5630
Functional Information:
Description: Similar to uncharacterized LOC101213975. [XP_004163203.1, Cucumis sativus]
InterPro: Protein of unknown function DUF760 (IPR008479)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:25.16,16.55,11.04,32.32,7.71,6.37,8.20,10.89
Arabidopsis thaliana homolog: AT1G32160.1
Automatic updates:
Name: NM_001255608 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100810147 (LOC100810147), mRNA; nuclear gene for chloroplast product.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:17010439..17010768 (- strand)
Length: 330
Type: three_prime_UTR
Position: Chr10:17010769..17011582 (- strand)
Length: 814
Type: CDS
Position: Chr10:17015289..17015563 (- strand)
Length: 275
Type: CDS
Position: Chr10:17015892..17016029 (- strand)
Length: 138
Type: CDS
Position: Chr10:17016030..17016068 (- strand)
Length: 39
Type: five_prime_UTR


>Vigan.10G116900.01
AGCCCTAATC GTAGGGGCGC GAAAGCTACA ATTCTGAAAA TGCAGGTTTC GAGTGCTATC AGTGACGTTT TGGTTGTGCT
TCCGCCTTCT GCATCTCTCA GACTACCGGA ATTTCGCCAC TTGCATGCTT TTGCCGTTTC TGATGCCAAG GGTTTTCTTT
CTGGTGGATT TCTTAAAAGC TGTCCTTCGT CTTACAATCC CAAGCACTAT AATGAATTCT ACAATTTCCG AGCTAGAGGT
TTAGTTGCAA GAGCATCAGC TAATTCAAGG GGCAATTCGG CGCCTTTTGC TCCTCTCCAA TTTGAGTCAC CAGTTGGTCA
GCTTTTGGAA CAAATTTCAA ATACCCATCC ACATCTACTG CCAGCGGCCA TTGATCAGCA ACTAGAGAAT CTTCAGACTG
CTAGAGATGC CCAGAAAGAA TCGTCTACTT CACCTGATGA TTCCCTTTAC AAGAGGATAG CTGAAGTCAA AGAGAAAGAG
AAGCGAACGA CATTGGAAGA GATCATGTAC TGCTCAATTG TGCATAAATT TTTAGAGAAC AACATTTCAA TGATTCCAAA
ACTAACAGCA ACATCAGATC CAACTGGTCG AGTGGATTTA TGGCCAAATC AAGAGCTGAA ACTAGAAGCT GTGCATTCTC
CAGAGGCATT CGAGATGATT CAGAGTCACT TATCTTTGGT ACTAGGAGAT CGGCTTGTGG GTCCCCTTCA GACAATTGTT
CAGATTAGTA AAATTAAACT GGGAAAGCTG TATGCTGCTT CCATAATGTA CGGATACTTT CTCAAACGAG TTGATGAACG
GTTTCAACTT GAGAGGTCAA TGGGAACCCT CCCCAAGGAT TTGGGAAAGA CTAAAAGTTT TGAGGAACCA TCACCAGGTA
TCAAGCTTTG GGATCCTGAT TCCTTGATCA CAGTTCAGGA TTACGACGAT GACAGTTATA GTGATAGTGA TTACATGGAT
ACAGAAGGCA AATCTTTCAG ACTAAGAGCT TATGTGATGC AGTTGGATGC AGAGACACTT CAGAGACTTG CTACTGTACG
ATCAAAGGAA GCTATATCAT TGATTGAAAA GCAAACTCAG GCCCTGTTCG GAAGGCCTGA TATCCGTGTG TCTGGTGATG
GTTCAATTGA AACATCCAAT GATGAATTGC TTTCACTCAC TTTCTCTGGC TTGACCATGC TAGTTTTGGA AGCTGTTGCT
TTTGGATCAT TCCTCTGGGA CAAGGAAAAC TATGTTGAAT CCAAGTACCC TTTTCTTAAT GAGTAGACTA GATCACTGTA
CCATTAGATT ATTTTTACTG TACCTTTTAG AATGTAAATT AATGCTTGGA ACTTGGCGTT TTGGTCGTCA AAGAATTGTT
TTCTATTCTT AACAGGAATG GTTCAATGTT ATATAGAGCC TGAGAAAAAC CACATGGACG TGGCAGTATA TAGGAAAATG
TACATTTAAT ACATAGGCAG GACAATAATA TATGCAATGG ATTTTGTAAA TGTCTCAAAC GAGTGAAATT TTCGTTTTTG
GCTTATAATT GTTGAATTGT GGCCTGCAAG CTTGTTCAAA AAAAACCTGG CTGCATAAGG GCTAATCACA ATGCCG

>Vigan.10G116900.01
ATGCAGGTTT CGAGTGCTAT CAGTGACGTT TTGGTTGTGC TTCCGCCTTC TGCATCTCTC AGACTACCGG AATTTCGCCA
CTTGCATGCT TTTGCCGTTT CTGATGCCAA GGGTTTTCTT TCTGGTGGAT TTCTTAAAAG CTGTCCTTCG TCTTACAATC
CCAAGCACTA TAATGAATTC TACAATTTCC GAGCTAGAGG TTTAGTTGCA AGAGCATCAG CTAATTCAAG GGGCAATTCG
GCGCCTTTTG CTCCTCTCCA ATTTGAGTCA CCAGTTGGTC AGCTTTTGGA ACAAATTTCA AATACCCATC CACATCTACT
GCCAGCGGCC ATTGATCAGC AACTAGAGAA TCTTCAGACT GCTAGAGATG CCCAGAAAGA ATCGTCTACT TCACCTGATG
ATTCCCTTTA CAAGAGGATA GCTGAAGTCA AAGAGAAAGA GAAGCGAACG ACATTGGAAG AGATCATGTA CTGCTCAATT
GTGCATAAAT TTTTAGAGAA CAACATTTCA ATGATTCCAA AACTAACAGC AACATCAGAT CCAACTGGTC GAGTGGATTT
ATGGCCAAAT CAAGAGCTGA AACTAGAAGC TGTGCATTCT CCAGAGGCAT TCGAGATGAT TCAGAGTCAC TTATCTTTGG
TACTAGGAGA TCGGCTTGTG GGTCCCCTTC AGACAATTGT TCAGATTAGT AAAATTAAAC TGGGAAAGCT GTATGCTGCT
TCCATAATGT ACGGATACTT TCTCAAACGA GTTGATGAAC GGTTTCAACT TGAGAGGTCA ATGGGAACCC TCCCCAAGGA
TTTGGGAAAG ACTAAAAGTT TTGAGGAACC ATCACCAGGT ATCAAGCTTT GGGATCCTGA TTCCTTGATC ACAGTTCAGG
ATTACGACGA TGACAGTTAT AGTGATAGTG ATTACATGGA TACAGAAGGC AAATCTTTCA GACTAAGAGC TTATGTGATG
CAGTTGGATG CAGAGACACT TCAGAGACTT GCTACTGTAC GATCAAAGGA AGCTATATCA TTGATTGAAA AGCAAACTCA
GGCCCTGTTC GGAAGGCCTG ATATCCGTGT GTCTGGTGAT GGTTCAATTG AAACATCCAA TGATGAATTG CTTTCACTCA
CTTTCTCTGG CTTGACCATG CTAGTTTTGG AAGCTGTTGC TTTTGGATCA TTCCTCTGGG ACAAGGAAAA CTATGTTGAA
TCCAAGTACC CTTTTCTTAA TGAGTAG

>Vigan.10G116900.01
MQVSSAISDV LVVLPPSASL RLPEFRHLHA FAVSDAKGFL SGGFLKSCPS SYNPKHYNEF YNFRARGLVA RASANSRGNS
APFAPLQFES PVGQLLEQIS NTHPHLLPAA IDQQLENLQT ARDAQKESST SPDDSLYKRI AEVKEKEKRT TLEEIMYCSI
VHKFLENNIS MIPKLTATSD PTGRVDLWPN QELKLEAVHS PEAFEMIQSH LSLVLGDRLV GPLQTIVQIS KIKLGKLYAA
SIMYGYFLKR VDERFQLERS MGTLPKDLGK TKSFEEPSPG IKLWDPDSLI TVQDYDDDSY SDSDYMDTEG KSFRLRAYVM
QLDAETLQRL ATVRSKEAIS LIEKQTQALF GRPDIRVSGD GSIETSNDEL LSLTFSGLTM LVLEAVAFGS FLWDKENYVE
SKYPFLNE*