GBrowse Details

Vigan.10G118800.01

Basic Information:
Name: Vigan.10G118800.01
Multiple alignment
Variant Information
Position: Chr10:17325479..17331869 (- strand)
Length: 6391
Functional Information:
Description: Similar to Uncharacterized protein. [M5WUH4, Prunus persica]
GO: Molecular Function: protein binding (GO:0005515)
InterPro: Proteasome component (PCI) domain (IPR000717)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:72.03,89.93,34.76,26.20,44.26,47.93,45.64,27.86
Arabidopsis thaliana homolog: AT4G19006.1, AT5G45620.1
Automatic updates:
Name: NM_001253255 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 26S proteasome non-ATPase regulatory subunit 13-like (LOC100804455), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001254032 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 26S proteasome non-ATPase regulatory subunit 13-like (LOC100793480), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:17325479..17326184 (- strand)
Length: 706
Type: three_prime_UTR
Position: Chr10:17326185..17326370 (- strand)
Length: 186
Type: CDS
Position: Chr10:17327623..17327722 (- strand)
Length: 100
Type: CDS
Position: Chr10:17327824..17328020 (- strand)
Length: 197
Type: CDS
Position: Chr10:17328170..17328250 (- strand)
Length: 81
Type: CDS
Position: Chr10:17330208..17330654 (- strand)
Length: 447
Type: CDS
Position: Chr10:17331675..17331824 (- strand)
Length: 150
Type: CDS
Position: Chr10:17331825..17331869 (- strand)
Length: 45
Type: five_prime_UTR


>Vigan.10G118800.01
GTTTCTTTAT TTCGGATTTT GGGTTTCTCT CTTGCGTCAA TCGTAATGGC TGCTCTGCAA TACTTGGAAT CGCTGCGCAA
CGCGCACCCT GAGCTCGCCG AATGGTACAA TTCGCTCGCG GATCTGTATC AGAAGAAGCT CTGGCATCAA CTCACCCTCA
AGCTCGAGCA GTTTGTCGCA CTCGCTGTTT TTCAGGCTGG TGATGCGTTG ATTCAATTAT ATCACAATTT CATCACAGAC
TTCGAGACTA AAATCAACCT TCTGAAGCTT GCACATTTTG CTGTTATAGT TTCTCGGCAG TATTCTGAAA AGGAAGCTGC
TGTTGGTTAT CTTGGAGGGG TCATTGAGAA GTTGCAGGCC ACTAGAGAGC AGCGCATAGA AGAACCTATC CTTTACATTA
AGATGCAAAT AGCAATATTC AAGCTTGAGC AAGGTGACCA GAAGGAATGC AAGAAACTCC TGGAAGATGG GAAGACTACA
CTTGACAGCA TGACAGATAT TGATCCATCT GTATATGCTA ACTATTACTG GGTATCATCT CAATACCACA AGACCCGCCA
AGAATTTGCT GAGTTCTACA AAAGTGCCCT TCTCTATTTG GCATACACAT CAGTGGAGTC TCTATCAGAA TCATTTAAGC
TGGATTTAGC ATTTGATTTG TCCCTCTCTG CCCTTCTTGG GGACAACATC TACAACTTTG GAGAGCTACT TGCCCATCCT
ATAATCAAGA GCCTTCTGGG GACAAAAGTG GAATGGCTTT ACTATATTCT GCAGGCATTC AATTCTGGTG ATTTAGTGCG
ATATCAAGAA TTGTGTCGGG TGCATAATGC TGCTTTAAGT GCCCAACCAG CACTGGTTCA AAATGAACAG AAGTTGTTGG
AGAAGATCAA CATTCTCTGT CTGATGGAGA TTATATTCAG TCGGCCTTCA GAAGATCGAA CTATTCCATT GAGTGTAATT
GCTGAGCGTA CAAAACTTTC TATAGAGAAT GTGGAACATC TCCTAATGAA GAGCTTATCT GTTCATCTAA TTGAGGGTAT
AATTGATCAA GTTGAGGGCA CAGTGCATGT TTCCTGGGTG CAACCAAGAG TTCTGGGTAT TCAACAGATC AAATCCTTAC
GGGATCGACT TGACAGTTGG ACGGGGAAAG TACACACTGC ATTGTTATCC ATCGAGGCAG AAACACCTGA TCTAATCGGA
TCGTGAATTT TCTTTTATTT GTTTTCTGCC CTTTGTAACA ATTTCTTAGG TTAAAGAGAA CACATCCTAA GGCGACAAAA
GATGAGGAGA CTTCCAAGTG ACATGGGGCC AACTTTGTAT GCTTTATTTG GGTTACCAGC TGCTTTCTGA GTGATTGCTG
GAAGAGCATC CCCTTGTACT TGGCTGAGAA ATTGTTGGTT CTATGCTTGC AAACTTACAG ACATGGTAAC TCATTTCCAC
CCTCGCTGTT TTTACGCATT AGAGTAAATG ACAGACTATG TATCTGGAAT TTTCTTTGAT ACGGCCATTT TTATTGACTT
TTAGAAGTAT TTTTCATTGA ACAGTCCAAA GCATTCATCT TCGTTCTTTT GCCCAATTTT TCCTCACTTT GATTGGGTGG
TACTTGCTAT GAGCTGAATC TTCCGTCTGT TATTCCAACT TCTGTTATTT TTGTGCGAGG CTGTTTTCTT GTAACAGCAA
TAAATTGATC AAATGACTCG AATGGTGATA GAGATGATAA ATGTTAACAC TTTGTTGAAC ATACCTTTTC CTTTTAGGTT
AAAATTTATT AGGAATTAAA GTTTGTGTTT TACTAGCATT TTTCATCGAA ATGTTTGGTT GAAATGCTTT GCGGTATGAA
TAAGTGGTCG TTTGCATTAA AAAAAATATT CGTGAAAGAA TGAATGAATT TATGGTGGAT TTGCCATTTC AT

>Vigan.10G118800.01
ATGGCTGCTC TGCAATACTT GGAATCGCTG CGCAACGCGC ACCCTGAGCT CGCCGAATGG TACAATTCGC TCGCGGATCT
GTATCAGAAG AAGCTCTGGC ATCAACTCAC CCTCAAGCTC GAGCAGTTTG TCGCACTCGC TGTTTTTCAG GCTGGTGATG
CGTTGATTCA ATTATATCAC AATTTCATCA CAGACTTCGA GACTAAAATC AACCTTCTGA AGCTTGCACA TTTTGCTGTT
ATAGTTTCTC GGCAGTATTC TGAAAAGGAA GCTGCTGTTG GTTATCTTGG AGGGGTCATT GAGAAGTTGC AGGCCACTAG
AGAGCAGCGC ATAGAAGAAC CTATCCTTTA CATTAAGATG CAAATAGCAA TATTCAAGCT TGAGCAAGGT GACCAGAAGG
AATGCAAGAA ACTCCTGGAA GATGGGAAGA CTACACTTGA CAGCATGACA GATATTGATC CATCTGTATA TGCTAACTAT
TACTGGGTAT CATCTCAATA CCACAAGACC CGCCAAGAAT TTGCTGAGTT CTACAAAAGT GCCCTTCTCT ATTTGGCATA
CACATCAGTG GAGTCTCTAT CAGAATCATT TAAGCTGGAT TTAGCATTTG ATTTGTCCCT CTCTGCCCTT CTTGGGGACA
ACATCTACAA CTTTGGAGAG CTACTTGCCC ATCCTATAAT CAAGAGCCTT CTGGGGACAA AAGTGGAATG GCTTTACTAT
ATTCTGCAGG CATTCAATTC TGGTGATTTA GTGCGATATC AAGAATTGTG TCGGGTGCAT AATGCTGCTT TAAGTGCCCA
ACCAGCACTG GTTCAAAATG AACAGAAGTT GTTGGAGAAG ATCAACATTC TCTGTCTGAT GGAGATTATA TTCAGTCGGC
CTTCAGAAGA TCGAACTATT CCATTGAGTG TAATTGCTGA GCGTACAAAA CTTTCTATAG AGAATGTGGA ACATCTCCTA
ATGAAGAGCT TATCTGTTCA TCTAATTGAG GGTATAATTG ATCAAGTTGA GGGCACAGTG CATGTTTCCT GGGTGCAACC
AAGAGTTCTG GGTATTCAAC AGATCAAATC CTTACGGGAT CGACTTGACA GTTGGACGGG GAAAGTACAC ACTGCATTGT
TATCCATCGA GGCAGAAACA CCTGATCTAA TCGGATCGTG A

>Vigan.10G118800.01
MAALQYLESL RNAHPELAEW YNSLADLYQK KLWHQLTLKL EQFVALAVFQ AGDALIQLYH NFITDFETKI NLLKLAHFAV
IVSRQYSEKE AAVGYLGGVI EKLQATREQR IEEPILYIKM QIAIFKLEQG DQKECKKLLE DGKTTLDSMT DIDPSVYANY
YWVSSQYHKT RQEFAEFYKS ALLYLAYTSV ESLSESFKLD LAFDLSLSAL LGDNIYNFGE LLAHPIIKSL LGTKVEWLYY
ILQAFNSGDL VRYQELCRVH NAALSAQPAL VQNEQKLLEK INILCLMEII FSRPSEDRTI PLSVIAERTK LSIENVEHLL
MKSLSVHLIE GIIDQVEGTV HVSWVQPRVL GIQQIKSLRD RLDSWTGKVH TALLSIEAET PDLIGS*