GBrowse Details

Vigan.10G119200.01

Basic Information:
Name: Vigan.10G119200.01
Multiple alignment
Variant Information
Position: Chr10:17341232..17345480 (- strand)
Length: 4249
Functional Information:
Description: Similar to ATP-dependent RNA helicase Dbp73D isoform 1. [XP_007040745.1, Theobroma cacao]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:61.39,35.92,11.34,14.26,27.53,19.66,37.45,9.00
Arabidopsis thaliana homolog: AT1G31940.1
Automatic updates:
Name: NM_001254237 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100791210 (LOC100791210), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:17341232..17342204 (- strand)
Length: 973
Type: three_prime_UTR
Position: Chr10:17342205..17342414 (- strand)
Length: 210
Type: CDS
Position: Chr10:17344490..17344669 (- strand)
Length: 180
Type: CDS
Position: Chr10:17345000..17345065 (- strand)
Length: 66
Type: CDS
Position: Chr10:17345066..17345480 (- strand)
Length: 415
Type: five_prime_UTR


>Vigan.10G119200.01
GTTCAGCTGA TTCCAAAGCA TTATTATTAT TACATTATTA TTAACTTCCC CAAACGAGAA ACTCCTCGCA ACACATCACA
GCACAACGCA ACAAACCCAA CACCATCATC GTTCACGCCA AGTAAAACGA TTCCTCTCTT CTCCACCTCA ACCTTTCTCT
CTCTTCGTTC TCTTTATTCT CTCTCTCCTT TTTCTCTGTG GCTTTCCAAT TCCAACACCA CCTGCTTCCG GGTTGCAAAA
CTTGCCCCGG ATCAGGACCC TTCTCATGCA ACCACTGATT CAAGTGTTTT TTGCCTCCCC CAGACAATAA CTATAGATAG
CTAATAGACC TTTCGCTAGA TAATCACGCA AACGTCAAAA GAAACGTTTT TTCTTGGTGG GTATTGATTC TTTTTGAGGT
GGGGAGAAAA GAACCATGGT GGGTATATTT TCAAGATTCT CTGTTGGAAG GAATGTCCAC CGACGTACTC AAAGTGCTTT
GGATGAGAGG GAAGTGATGC CCCCAAACTC AGAGGCTGTT GCTGCAGTGG CGAGTGCTGC AACTGCCACT TCTCATGGAA
TTGAAGTGGC TGTGGAGTTT AAGCCTGTTG AACATCCAAT TGAACCTCTT GACAGTGATA GGCCAATTCA GTGCCCGTTG
CCAGAGCCAT CTATTCTTAA TGATGGAAGA ATATGGAAAG AACGAGTTTC TGCAACTGTG CGGAGAAGAG GGGACCTGCC
AGTGATGAAG GAAGGGGGAG CACTTGAATC TGAAGATGCT GGAATCAAGC CCCGGACATC CCGGTCGAAT AGAATGATCC
TACCATCTGT CAGTGCTCCG GAGCATAATC TTTTAAAACT TCTTGAAGAG TGTAATGCTT CAGGCATCTA AACCGGTATT
GACTTTAATG TTGTATTTTG TTGAACGTGA CACCCCTTCA TCTCTTTTTG CTGTTCTTTG CTATTTCTAT ATATTATCCG
GCTCAAATAT GTATATTCAA ATGTATACTC ATAAAAAGTC AAGTGTGGCA CATTTTCGCA ATCTGCTTTA TATGAAGACT
CTGGTAATAT GCTTCAAATT TCTTCTTTGG ATCCACTGTT ATTAAGCTTA TTTATGCTTT CCTTTGCAGC ATGTACCCTT
GATGAATACC TGAATTTACT TAGGCTATGC ATGATAGAAG TTAAAATCAG AGGAATGGAG AATTAAGATT GAAAGTTTTC
TATGTGTCAA ACCATTGTTC GCATTAAACT ACATGTGTAT TCTTCTTTCT TCTTAAACCG CCAAGCACAA CATTGTGTCA
CAATTTAACA AAAGGTGAAA TGAAGAAACT CTTTGTTAAC CTATATTCAT TCTATCTATA TTTAGCTCAT TCCTCTCATC
ACTCTAAAAC TCTGCTTTAA AAAATCCTTG AAACGATTGA AATAATAAGC TGATTTGTAA TAAGATTCAA AACCATGATC
AGAATGATAT TTTGGTTAAA CCTGTTCCCT TTTATATGGA AGGAGCTTCA TATCAAATGC TGTTCTTTCT ATTGCTCCAG
CTCAAAATGC AAGCAATGAC TAGAATTCTC TGCTAGTTCA TTTTAGGAAA CAGGCTTCTC TCTGAATCCT GTGCCTCATG
CTTGTCTTGC CTTGCACGGC TAATATTCCA AAATCAGCTT TGCTAGATAC ATTAATGCAG TAAATAGGTT AGGGGAGTGT
ATCTATAGGT ATACTCGTCA GTTATAATCA ACAGGCATCA TTTTTCACTG GCTAAGGAAT GTATGAAAGA GTTAACAATT
TAGGGAATCT GTATATTCTC ATAAACAAGT TATTTTTTGA CTTGTTTAAA ATATATCCTT TTGTCTATGA ATGATGAAGT
AGAA

>Vigan.10G119200.01
ATGGTGGGTA TATTTTCAAG ATTCTCTGTT GGAAGGAATG TCCACCGACG TACTCAAAGT GCTTTGGATG AGAGGGAAGT
GATGCCCCCA AACTCAGAGG CTGTTGCTGC AGTGGCGAGT GCTGCAACTG CCACTTCTCA TGGAATTGAA GTGGCTGTGG
AGTTTAAGCC TGTTGAACAT CCAATTGAAC CTCTTGACAG TGATAGGCCA ATTCAGTGCC CGTTGCCAGA GCCATCTATT
CTTAATGATG GAAGAATATG GAAAGAACGA GTTTCTGCAA CTGTGCGGAG AAGAGGGGAC CTGCCAGTGA TGAAGGAAGG
GGGAGCACTT GAATCTGAAG ATGCTGGAAT CAAGCCCCGG ACATCCCGGT CGAATAGAAT GATCCTACCA TCTGTCAGTG
CTCCGGAGCA TAATCTTTTA AAACTTCTTG AAGAGTGTAA TGCTTCAGGC ATCTAA

>Vigan.10G119200.01
MVGIFSRFSV GRNVHRRTQS ALDEREVMPP NSEAVAAVAS AATATSHGIE VAVEFKPVEH PIEPLDSDRP IQCPLPEPSI
LNDGRIWKER VSATVRRRGD LPVMKEGGAL ESEDAGIKPR TSRSNRMILP SVSAPEHNLL KLLEECNASG I*