GBrowse Details

Vigan.10G121800.01

Basic Information:
Name: Vigan.10G121800.01
Multiple alignment
Variant Information
Position: Chr10:17675393..17679163 (- strand)
Length: 3771
Functional Information:
Description: Similar to 50S ribosomal protein L35. [G7K876, Medicago truncatula]
GO: Biological Process: translation (GO:0006412)
Cellular Component: intracellular (GO:0005622)
Cellular Component: ribosome (GO:0005840)
Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro: Ribosomal protein L35, non-mitochondrial (IPR001706)
Ribosomal protein L35 (IPR021137)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:17.87,9.38,14.10,12.86,19.71,12.10,13.26,10.36
Arabidopsis thaliana homolog: AT5G45590.1
Automatic updates:
Name: NM_001253194 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100814427 (LOC100814427), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:17675393..17675695 (- strand)
Length: 303
Type: three_prime_UTR
Position: Chr10:17675696..17675785 (- strand)
Length: 90
Type: CDS
Position: Chr10:17678366..17678450 (- strand)
Length: 85
Type: CDS
Position: Chr10:17678557..17678660 (- strand)
Length: 104
Type: CDS
Position: Chr10:17678738..17678932 (- strand)
Length: 195
Type: CDS
Position: Chr10:17678933..17679163 (- strand)
Length: 231
Type: five_prime_UTR


>Vigan.10G121800.01
TAAAAGACTC TACTTCGTAC ACAATGAGGA GCTAGGAAGC CCAAATTAGG CTCCACTAAC AAGAAACAAT TAAGCCCAAA
TTAGCCCAGA TCTTCACCTC AAAGTTAAAC AAAAACTAGA ATTAAAAAAA AAAAAATCCC CAAATTCGAA GGTGAAAAAG
AAGCACTTTG GCAATCGCAG GTTTGGGTTC GATTGTGCAG AGTGCAAAAA CTGCAAATCA GTGAAGTCGC CATGCTTCGT
TGTTTGTCGA AACTTCGTTG TCTCGCCCTT CAATCACGCC AAATTCTACC ACCGCCCTCT TCTCGGCGGC TCCTCCACCA
TTTGCGGCCG CAACCGCTTC ACTCTGCTTC CACATTTCGC ACTTCTTCTC CTCCGTCCTT AGTTTTCTCT TCATGGCCTC
TCCACGCATC TCATCCTCCC CCTTCCTTGG TTCAAGTGCG CCACGTGTCG TCCAGGGAAC GAAAACTGAG AAGAAAGCCG
ATGACTCCAA CTATTTCCAA GGTTAAGAAA ACGAAAATGA AATCTTATTC GTCTTTAAAA TCCAGATTCA GAACAATGAA
TGATGGGAAC ATCAGGCGCT GGAAGGAAGG CAAGCGTCAC AATGCTCATC TCAAGTCAAA GAAATCAAAA CGTAGATTGA
GGAAACCTGC TATTGTTCCA GCGGCTTATG CCAAAGTAAT GAAGAAGCTC AATTTCTTTG CTTAGATATT GGAAGTTTTG
CTGCTGGTTA CAGCATGAAA GAGGATCGAC CAGGTTTTGC ATTTTTAACT CCAATCATTT GTTGACCTTC ACATTTTAGA
ATCTGTAAAA CGAGCAAATT GCCGAACAGT TTGTTTGTTG TGGAACAGTT TGAATTGATG ATATTTCGAG GTCATGCCTA
TTTAAAGTGG CATGTTTTAG TTGATAATGT ATGCATTATT GTTAACATCC CAGTGGCTGA TTGATCCTTT CATGTGATAC
ATTCAATTTG AGTTCAGTTT GATAAAGTAT CGGACTCCTG GATACATG

>Vigan.10G121800.01
ATGCTTCGTT GTTTGTCGAA ACTTCGTTGT CTCGCCCTTC AATCACGCCA AATTCTACCA CCGCCCTCTT CTCGGCGGCT
CCTCCACCAT TTGCGGCCGC AACCGCTTCA CTCTGCTTCC ACATTTCGCA CTTCTTCTCC TCCGTCCTTA GTTTTCTCTT
CATGGCCTCT CCACGCATCT CATCCTCCCC CTTCCTTGGT TCAAGTGCGC CACGTGTCGT CCAGGGAACG AAAACTGAGA
AGAAAGCCGA TGACTCCAAC TATTTCCAAG GTTAAGAAAA CGAAAATGAA ATCTTATTCG TCTTTAAAAT CCAGATTCAG
AACAATGAAT GATGGGAACA TCAGGCGCTG GAAGGAAGGC AAGCGTCACA ATGCTCATCT CAAGTCAAAG AAATCAAAAC
GTAGATTGAG GAAACCTGCT ATTGTTCCAG CGGCTTATGC CAAAGTAATG AAGAAGCTCA ATTTCTTTGC TTAG

>Vigan.10G121800.01
MLRCLSKLRC LALQSRQILP PPSSRRLLHH LRPQPLHSAS TFRTSSPPSL VFSSWPLHAS HPPPSLVQVR HVSSRERKLR
RKPMTPTISK VKKTKMKSYS SLKSRFRTMN DGNIRRWKEG KRHNAHLKSK KSKRRLRKPA IVPAAYAKVM KKLNFFA*