GBrowse Details

Vigan.10G122300.01

Basic Information:
Name: Vigan.10G122300.01
Multiple alignment
Variant Information
Position: Chr10:17753912..17756252 (+ strand)
Length: 2341
Functional Information:
Description: Similar to Uncharacterized protein. [V4T8I5, Citrus clementina.]
InterPro: NmrA-like (IPR008030)
NAD(P)-binding domain (IPR016040)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.70,1.68,12.45,24.43,1.37,15.32,1.88,40.74
Automatic updates:
Name: NM_001254275 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max isoflavone reductase homolog (LOC100780465), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:17753912..17754205 (+ strand)
Length: 294
Type: five_prime_UTR
Position: Chr10:17754206..17754535 (+ strand)
Length: 330
Type: CDS
Position: Chr10:17755212..17755452 (+ strand)
Length: 241
Type: CDS
Position: Chr10:17755588..17755791 (+ strand)
Length: 204
Type: CDS
Position: Chr10:17755931..17756094 (+ strand)
Length: 164
Type: CDS
Position: Chr10:17756095..17756252 (+ strand)
Length: 158
Type: three_prime_UTR


>Vigan.10G122300.01
TCTAAAACGG AAAGTATGTT GAGAAAGCCA TTTCTAGTGG TATTATAGAG GTTGAAATGT TCAAACAATC GACTTTTCCT
CTAAGCAAAA GCAAACGCTT CATTTGTATT TCTCCCAAGC TTCGGTAAAC ATAGCATTTT AAGCCTTCAA GCTATGTAAA
ATTCAATACC AAAAGAGAAG CCACAATATA TTATTATGTT TAAGCTATAG CAGGTAGAAT ATATTATCAT ACAGGGATCA
TGTACACACA TCTCCATCTT ACAGCAATAC TCTAACAAGA AAGGGAAGAG AGAGATGGAA AAGAGCAAAG TTCTTATTGT
TGGGGGAACT GGCTACATAG GGAAAAGGTT GGTGAAGGCT AGTTTAGCTC AAGGACACCA TACATATGTC CTTCACAGGC
CAGAGATTGG TGTTGACATT GAGAAAGTTC AGCTTCTCTT GTCGTTCAAG GAACAAGGAG CAAGACTAGT GTCAGGTTCC
TTTAATGATC ATCAGAGCCT GGTGAATGCC GTGAAACTGG TTGATGTTGT CATTTGTGCC ATATCTGGTG TTCATATCCG
CAGCCACCAA ATCCTCCTCC AACTTAAACT TGTTGATGCA ATAAAAGAAG CTGGAAATGT CAAGAGATTT TTGCCTTCAG
AGTTTGGGAC TGATCCTTCA AGAATGGGAC ATGCATTGGA GCCTGGAAGA GTAACATTTG ACGACAAAAT GGTTGTAAGA
AAAGCTATTG AAGAGGCTGG AATACCATTC ACCTATATTT CTGCTAATTG TTTTGCCGGT TACTTTCTTG GTGGGTTATG
TCAGCCCGGC TTTATAATGC CCCCAAGGGA TTCTGTAGTG TTATTTGGAG ATGGAAACGT AAAGGCTATC TATGTGGAAG
AATATGATAT AGCCATGTAT ACTATCAAAA GCGTAGATGA TCCCAGAACT CTGAACAAAA CAGTTTACAT TAGGCCACCA
GAAAACATAC TCTCCCAGAG AGAAGTTGTT CAAATTTGGG AGAAACTGAT TGGGAAAGAG TTGCAGAAAT CTTCAATTTC
TGCAGAACAA CTTTTGAGTT CCATGGAAGG ACAACCTTAT GAACAGCAAG TAGGAATTGG ACATTACTAC CATGTTTGCT
TTGAAGGATG TCTCACAAAT TTTGAGATTG GAGAAGAAGG GCTTGAAGCT TGTGAATTGT ATCCTGAAAT AAAGTACACT
ACTGTTGAAG ACTACATGAA ACGTTATGTA TAGAAGCTTG TATTTGAATT CGAATAAAGA AAACGAAAAC TGTTAGTGCA
ACTGTAAATA AGAAAACAAA ATGGCAATGC ACAGAGAGCA ATTTGTGATC ATATAATTAC TGTTTTACTT GCACGGAATG
TTTATATCAG TTATATTCTT TTATTTAAAA A

>Vigan.10G122300.01
ATGGAAAAGA GCAAAGTTCT TATTGTTGGG GGAACTGGCT ACATAGGGAA AAGGTTGGTG AAGGCTAGTT TAGCTCAAGG
ACACCATACA TATGTCCTTC ACAGGCCAGA GATTGGTGTT GACATTGAGA AAGTTCAGCT TCTCTTGTCG TTCAAGGAAC
AAGGAGCAAG ACTAGTGTCA GGTTCCTTTA ATGATCATCA GAGCCTGGTG AATGCCGTGA AACTGGTTGA TGTTGTCATT
TGTGCCATAT CTGGTGTTCA TATCCGCAGC CACCAAATCC TCCTCCAACT TAAACTTGTT GATGCAATAA AAGAAGCTGG
AAATGTCAAG AGATTTTTGC CTTCAGAGTT TGGGACTGAT CCTTCAAGAA TGGGACATGC ATTGGAGCCT GGAAGAGTAA
CATTTGACGA CAAAATGGTT GTAAGAAAAG CTATTGAAGA GGCTGGAATA CCATTCACCT ATATTTCTGC TAATTGTTTT
GCCGGTTACT TTCTTGGTGG GTTATGTCAG CCCGGCTTTA TAATGCCCCC AAGGGATTCT GTAGTGTTAT TTGGAGATGG
AAACGTAAAG GCTATCTATG TGGAAGAATA TGATATAGCC ATGTATACTA TCAAAAGCGT AGATGATCCC AGAACTCTGA
ACAAAACAGT TTACATTAGG CCACCAGAAA ACATACTCTC CCAGAGAGAA GTTGTTCAAA TTTGGGAGAA ACTGATTGGG
AAAGAGTTGC AGAAATCTTC AATTTCTGCA GAACAACTTT TGAGTTCCAT GGAAGGACAA CCTTATGAAC AGCAAGTAGG
AATTGGACAT TACTACCATG TTTGCTTTGA AGGATGTCTC ACAAATTTTG AGATTGGAGA AGAAGGGCTT GAAGCTTGTG
AATTGTATCC TGAAATAAAG TACACTACTG TTGAAGACTA CATGAAACGT TATGTATAG

>Vigan.10G122300.01
MEKSKVLIVG GTGYIGKRLV KASLAQGHHT YVLHRPEIGV DIEKVQLLLS FKEQGARLVS GSFNDHQSLV NAVKLVDVVI
CAISGVHIRS HQILLQLKLV DAIKEAGNVK RFLPSEFGTD PSRMGHALEP GRVTFDDKMV VRKAIEEAGI PFTYISANCF
AGYFLGGLCQ PGFIMPPRDS VVLFGDGNVK AIYVEEYDIA MYTIKSVDDP RTLNKTVYIR PPENILSQRE VVQIWEKLIG
KELQKSSISA EQLLSSMEGQ PYEQQVGIGH YYHVCFEGCL TNFEIGEEGL EACELYPEIK YTTVEDYMKR YV*