GBrowse Details

Vigan.10G125400.01

Basic Information:
Name: Vigan.10G125400.01
Multiple alignment
Variant Information
Position: Chr10:18092959..18105973 (+ strand)
Length: 13015
Functional Information:
Description: Similar to B0403H10-OSIGBa0105A11.6 protein. [Q01HU2, Oryza sativa]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:21.65,9.99,13.24,19.71,11.49,11.81,10.04,11.11
Arabidopsis thaliana homolog: AT4G19140.1
Automatic updates:
Name: NM_001254474 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100811221 (LOC100811221), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:18092959..18093255 (+ strand)
Length: 297
Type: five_prime_UTR
Position: Chr10:18093256..18093475 (+ strand)
Length: 220
Type: CDS
Position: Chr10:18093959..18094089 (+ strand)
Length: 131
Type: CDS
Position: Chr10:18094833..18094958 (+ strand)
Length: 126
Type: CDS
Position: Chr10:18095122..18095249 (+ strand)
Length: 128
Type: CDS
Position: Chr10:18105225..18105492 (+ strand)
Length: 268
Type: CDS
Position: Chr10:18105493..18105973 (+ strand)
Length: 481
Type: three_prime_UTR


>Vigan.10G125400.01
GAAAATAGCA GCTTTTAAAA ATCGGAGACG AATATTGACA GCTACCAGAA AATTTAAAGG AGGCAAGGCA CAAGGGAGTT
GAATGATCAA TAGTCTAAAC TCTTTTGTGG TGTATGTTTG ACCGTGACCA CGTGACCAAC CCAATCCCGT TTTCCGTTAC
CCTACAAATA TCTCGTTCCC GTTTTGCGTT TCCAACCGAA ACCCCTTTCC TCCGATCACC GGTTAAATGG TTCCGACCAC
CGGTGACCGG CATTGACACC ACTTTTCTTC CGACGAAGCC TAGCCCTTTC CAGATTCATG GATCCCTCTG ATTCTCACTC
CCACTCCCAG GAACCGGAAG CGCCCCAGAA GAACGGTGTC GTATTTGTCG TACTGCGATG GGTTCTTGCG ATTGTCTTCC
CCTTCCTCTT CTTTCTCTCA ATTCCCTTTC TGGTTGGTTT ACTGGTTCTC ATGTTCGCCG ATTTCTCTAT TCCCAGCCCC
ATTTCTCTCC CCTCACAGTG CAAAATCGTC TCCACAGGTG TTGATATCAG GTCATCTAAG ATTTGTGAAA TTGGATTGTT
AAATTATAAA GCGAAGGATG TGTTTCAGCA TTTTGAAAGA AGCAAATTTC TCTGCCGTTA TGATTACTAT TGGGCTTCAG
TATTCAAGGT AGAATATAAA GATCACTTTT CTGGTCAGAC ACAAGTTGCA TTTGCCGAGG CTCCAAATGA GGCCCTTCCT
CTTTATTGCA GACCTAATTT TGGTGCTGCA TGGCTGACAC AATATAAATT TAAGGTCAAT GAGACTTACA ACTGCTGGTA
CACATCTGGC ATTTCCAAAG TTCGTTTACC TCAAGATAAT CTTTTTGGTT GTCATGCCCA CCAGCAGTCT ACTCTTGAAA
AGAGTAGAGA ATATTCTACC ATGGCTATGG AGATGGCAAT TTCCTGGTTT TCCAGTAGAG GAAGGGCCAA GCATTGGAGG
TGGGAAACTT TGATAGGAGT TGTAAGTGGA TTCTTAACTT CATTGATCTC CATAACCTTC ATTAGGTTCC TACATATACT
GCTATCATCT ATATATCAAT CTTTCACAAC ATGGATATTT CCTTGGCGTG TCAATGCCGT TCTGGTCAGG CGCACTTGTT
TTCTTTTAGC ATACTTGTCT TTTGTGGCTT GGTCTTATGG ACATATTTAG TTTCCCTAAA TTATAGCACG CGCTTTTAGA
AAGAGCAATG TCCTTTTCAC AGAATCGCAA TGTAATATTA TAACTACAGC AGGTGATATT CGTGCCAGAT GATAAATAAG
GGTCGCTCTG TGTAACGAAG TCATGTATAG TTCGAGGAAC GGAGGAATTA AAACTGCATT AGTTTACAGT AAATGTACTC
ATTTACTATT AAAGGAAAGA ATATTAATCT TAGATAAAAC AGTAGTTTGG GAATAGTGGT TTACATTGTG GTATCTTATA
TCTTGGATCT GTTTGAAATG CTGGTGTTGA GCCACCTCTG CACTAGTTAA AAAAGTTGTA AAAGTCATTA CGGTAGCATT
TGGCCTGTTG GAATGATTTT GGTGGTCATG AGAATGAAAT GGAAATACCA TTTATTTTTC ATGTTTGACG TCATCGTCAT
GAATGAAAAA ATTTAATTTA TCCCTGAACA TGCTAGTCAT TTGCAAATAA A

>Vigan.10G125400.01
ATGGATCCCT CTGATTCTCA CTCCCACTCC CAGGAACCGG AAGCGCCCCA GAAGAACGGT GTCGTATTTG TCGTACTGCG
ATGGGTTCTT GCGATTGTCT TCCCCTTCCT CTTCTTTCTC TCAATTCCCT TTCTGGTTGG TTTACTGGTT CTCATGTTCG
CCGATTTCTC TATTCCCAGC CCCATTTCTC TCCCCTCACA GTGCAAAATC GTCTCCACAG GTGTTGATAT CAGGTCATCT
AAGATTTGTG AAATTGGATT GTTAAATTAT AAAGCGAAGG ATGTGTTTCA GCATTTTGAA AGAAGCAAAT TTCTCTGCCG
TTATGATTAC TATTGGGCTT CAGTATTCAA GGTAGAATAT AAAGATCACT TTTCTGGTCA GACACAAGTT GCATTTGCCG
AGGCTCCAAA TGAGGCCCTT CCTCTTTATT GCAGACCTAA TTTTGGTGCT GCATGGCTGA CACAATATAA ATTTAAGGTC
AATGAGACTT ACAACTGCTG GTACACATCT GGCATTTCCA AAGTTCGTTT ACCTCAAGAT AATCTTTTTG GTTGTCATGC
CCACCAGCAG TCTACTCTTG AAAAGAGTAG AGAATATTCT ACCATGGCTA TGGAGATGGC AATTTCCTGG TTTTCCAGTA
GAGGAAGGGC CAAGCATTGG AGGTGGGAAA CTTTGATAGG AGTTGTAAGT GGATTCTTAA CTTCATTGAT CTCCATAACC
TTCATTAGGT TCCTACATAT ACTGCTATCA TCTATATATC AATCTTTCAC AACATGGATA TTTCCTTGGC GTGTCAATGC
CGTTCTGGTC AGGCGCACTT GTTTTCTTTT AGCATACTTG TCTTTTGTGG CTTGGTCTTA TGGACATATT TAG

>Vigan.10G125400.01
MDPSDSHSHS QEPEAPQKNG VVFVVLRWVL AIVFPFLFFL SIPFLVGLLV LMFADFSIPS PISLPSQCKI VSTGVDIRSS
KICEIGLLNY KAKDVFQHFE RSKFLCRYDY YWASVFKVEY KDHFSGQTQV AFAEAPNEAL PLYCRPNFGA AWLTQYKFKV
NETYNCWYTS GISKVRLPQD NLFGCHAHQQ STLEKSREYS TMAMEMAISW FSSRGRAKHW RWETLIGVVS GFLTSLISIT
FIRFLHILLS SIYQSFTTWI FPWRVNAVLV RRTCFLLAYL SFVAWSYGHI *