GBrowse Details

Vigan.10G127400.01

Basic Information:
Name: Vigan.10G127400.01
Multiple alignment
Variant Information
Position: Chr10:18300698..18303259 (+ strand)
Length: 2562
Functional Information:
Description: Similar to Ubiquinol oxidase. [Q4F8G4, Vigna unguiculata]
GO: Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: alternative oxidase activity (GO:0009916)
InterPro: Alternative oxidase (IPR002680)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.64,5.79,9.69,4.06,6.40,3.71,2.71,1.48
Arabidopsis thaliana homolog: AT3G22370.1
Automatic updates:
Name: NM_001249237 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ubiquinol oxidase 1, mitochondrial (AOX1), mRNA; nuclear gene for mitochondrial product.
PubMed ID: 10225419 NCBI(pubmed)
8580775 NCBI(pubmed)
8290651 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr10:18300698..18300816 (+ strand)
Length: 119
Type: five_prime_UTR
Position: Chr10:18300817..18301104 (+ strand)
Length: 288
Type: CDS
Position: Chr10:18301273..18301401 (+ strand)
Length: 129
Type: CDS
Position: Chr10:18302410..18302898 (+ strand)
Length: 489
Type: CDS
Position: Chr10:18302987..18303046 (+ strand)
Length: 60
Type: CDS
Position: Chr10:18303047..18303259 (+ strand)
Length: 213
Type: three_prime_UTR


>Vigan.10G127400.01
TTCTTTCATC ACCAACAAAA ACTACTCATT TTCTCAACTT TCTTTCTGAT TTTCTCAACT CACTACATTT CTCTCTTTCG
TAATAATTCT ATCAGAGTCT AGATTTTGGT GCGTTGGTGA TGAGGATGAT GATGATTCGC GGCGGCAGCA ACCGAGTGGC
CAACACTGTC ATGTTGGTGG CGAAGGGTTT AAGCGGTGAA GTTGGTGGTG CAAGAGCGTT TTATGGCGGT GGTGTGAGGA
GTGAGAGCAC TTTGGTTTTA CCGGAGAAGG AGAAGATGGA GAAGAAGGTT GGTGCGTCTG GCGGTGGTGA AAACAAAGAT
CAAAAAGGGA CTGTGAGTTA TTGGGGCGTT GAACCCTCTA AGATCACCAA ACTAGATGGC ACAGAGTGGA AGTGGAATTG
CTTTAGGCCA TGGGAGACAT ACAAAGCAGA TGTTTCAATT GATCTGAACA AGCACCATGC ACCCACCACA TTTCTTGACA
AAATGGCTCT TTGGACTGTC AAAACTCTCC GATACCCCAC TGATCTATTT TTCCAGAGAC GATATGGATG CCGAGCAATG
ATGCTAGAAA CAGTGGCAGC AGTGCCTGGG ATGGTAGCAG GCATGCTATT GCATTTGAAA TCACTTAGAA GATTTGAGCA
GAGTGGGGGT TGGATCAAAG CACTGCTAGA AGAAGCAGAA AATGAACGGA TGCACCTAAT GACGTTCATG GAAGTGGCAA
AGCCAAAGTG GTACGAGCGT GCACTGGTCA TAACTGTGCA AGGTGTTTTC TTCAATGCAT ACTTCTTGGG GTATATGATA
TCTCCTAAAT TTGCACACCG CATGGTGGGT TACCTTGAGG AGGAGGCAAT ACACTCCTAC ACGGAGTTCC TCAAGGAATT
GGACAAGGGC AACATACAGA ATGTGCCAGC TCCAGCCATT GCCATCGACT ACTGGCAGCT CCCACCAGAC TCCACTTTAA
GGGATGTTGT CACGGTTGTC AGAGCTGACG AGGCACACCA CCGTGATGTC AACCACTTTG CTTCGGACAT ACACTACCAA
GGGCGCGAGT TAAGAGAGAT TGCTGCTCCA GTTGGTTATC ACTAGAGTCA ATTTTTGGCT TCCAGTATGA ATACTGGTTT
TGGTTACAGA ATAAATCTAA TGATGCTGTA AATAATGTGA AGCCTTGAAT TTTTCAGAAT CATATTGAAG CTTTTGTAGT
TCTACAGTGC ACTCTTCAAA GTAAGTGGAG TTATATGATA CATGATATAT TTTGCTTACT AATTCGTTGA TTTCTTCTTC
CATGTGAATA TGGATTTT

>Vigan.10G127400.01
ATGAGGATGA TGATGATTCG CGGCGGCAGC AACCGAGTGG CCAACACTGT CATGTTGGTG GCGAAGGGTT TAAGCGGTGA
AGTTGGTGGT GCAAGAGCGT TTTATGGCGG TGGTGTGAGG AGTGAGAGCA CTTTGGTTTT ACCGGAGAAG GAGAAGATGG
AGAAGAAGGT TGGTGCGTCT GGCGGTGGTG AAAACAAAGA TCAAAAAGGG ACTGTGAGTT ATTGGGGCGT TGAACCCTCT
AAGATCACCA AACTAGATGG CACAGAGTGG AAGTGGAATT GCTTTAGGCC ATGGGAGACA TACAAAGCAG ATGTTTCAAT
TGATCTGAAC AAGCACCATG CACCCACCAC ATTTCTTGAC AAAATGGCTC TTTGGACTGT CAAAACTCTC CGATACCCCA
CTGATCTATT TTTCCAGAGA CGATATGGAT GCCGAGCAAT GATGCTAGAA ACAGTGGCAG CAGTGCCTGG GATGGTAGCA
GGCATGCTAT TGCATTTGAA ATCACTTAGA AGATTTGAGC AGAGTGGGGG TTGGATCAAA GCACTGCTAG AAGAAGCAGA
AAATGAACGG ATGCACCTAA TGACGTTCAT GGAAGTGGCA AAGCCAAAGT GGTACGAGCG TGCACTGGTC ATAACTGTGC
AAGGTGTTTT CTTCAATGCA TACTTCTTGG GGTATATGAT ATCTCCTAAA TTTGCACACC GCATGGTGGG TTACCTTGAG
GAGGAGGCAA TACACTCCTA CACGGAGTTC CTCAAGGAAT TGGACAAGGG CAACATACAG AATGTGCCAG CTCCAGCCAT
TGCCATCGAC TACTGGCAGC TCCCACCAGA CTCCACTTTA AGGGATGTTG TCACGGTTGT CAGAGCTGAC GAGGCACACC
ACCGTGATGT CAACCACTTT GCTTCGGACA TACACTACCA AGGGCGCGAG TTAAGAGAGA TTGCTGCTCC AGTTGGTTAT
CACTAG

>Vigan.10G127400.01
MRMMMIRGGS NRVANTVMLV AKGLSGEVGG ARAFYGGGVR SESTLVLPEK EKMEKKVGAS GGGENKDQKG TVSYWGVEPS
KITKLDGTEW KWNCFRPWET YKADVSIDLN KHHAPTTFLD KMALWTVKTL RYPTDLFFQR RYGCRAMMLE TVAAVPGMVA
GMLLHLKSLR RFEQSGGWIK ALLEEAENER MHLMTFMEVA KPKWYERALV ITVQGVFFNA YFLGYMISPK FAHRMVGYLE
EEAIHSYTEF LKELDKGNIQ NVPAPAIAID YWQLPPDSTL RDVVTVVRAD EAHHRDVNHF ASDIHYQGRE LREIAAPVGY
H*