VIGGS:GBrowse

Vigan.10G128500.01

Basic Information:

Name:	Vigan.10G128500.01 Multiple alignment Variant Information
Position:	Chr10:18490593..18494032 (+ strand)
Length:	3440

Functional Information:

Description:	Similar to Uncharacterized protein. [I1J849, Glycine max]
GO:	Biological Process: protein phosphorylation (GO:0006468)
	Molecular Function: protein kinase activity (GO:0004672)
	Molecular Function: protein serine/threonine kinase activity (GO:0004674)
	Molecular Function: ATP binding (GO:0005524)
	Molecular Function: transferase activity, transferring phosphorus-containing groups (GO:0016772)
InterPro:	Protein kinase domain (IPR000719)
	Serine-threonine/tyrosine-protein kinase catalytic domain (IPR001245)
	Serine/threonine-protein kinase, active site (IPR008271)
	Protein kinase-like domain (IPR011009)
	Protein kinase, ATP binding site (IPR017441)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.03,0.04,0.90,1.61,19.29,0.76,15.04,2.97
Arabidopsis thaliana homolog:	AT1G61590.1

Automatic updates:

Name:	NM_001253116 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max putative class VII receptor-like cytoplasmic kinase (LOC100820300), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr10:18490593..18490876 (+ strand)
Length:	284
Type:	five_prime_UTR

Position:	Chr10:18490877..18491293 (+ strand)
Length:	417
Type:	CDS

Position:	Chr10:18492140..18492275 (+ strand)
Length:	136
Type:	CDS

Position:	Chr10:18492649..18492782 (+ strand)
Length:	134
Type:	CDS

Position:	Chr10:18492894..18493017 (+ strand)
Length:	124
Type:	CDS

Position:	Chr10:18493481..18493929 (+ strand)
Length:	449
Type:	CDS

Position:	Chr10:18493930..18494032 (+ strand)
Length:	103
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.10G128500.01
TAGTAATACT ACGTACAAAA AGACATTGGT GTATTGTGCA TGAAGACACG ACATAGATGA CAAATTAGAG AACAAAACAA
CTTACACATA AGTAAACAAA CATATGGAAA CAAATAATAA TGTCTGCAAA AATTACCAGA GTGGTTAGAG CAGTTGAAGA
AAGAATATCT TTTCCTAAGT CTCCATCAAA TGTAGGAAAA CTTTACCATA TATTGTACAA TATTCTTGGT ACTTATATTT
TGCAGAACAT CAGAATTCTT TCTCACAAGA CCTTAACTTA GGAAATGAAG GAACCATCAA AGGCATGGAG ACCCTTCACT
GCAAATTGCT GCTCCACAGA GGACCAAACC GTGTTCAAGA ACTTCAGCAG GTGCAAGCCT TCACGTTCTG ACTTGTCAAA
GAACATTGCT CCTTTGCCAT CGTTCAGGAG GCTCTCCTTC TCTGATCTCA GTCGTTCCTC GTCTGTGCGA ATCAATGAGG
ATCTTGCACA GTCTTTTGGG TCGGATTTGT TTGATTTTCA GCTGAGTGAG CTGCGTGCCA TAACTCAGAA TTTCAGCAGC
AACTTCTTGC TGGGAGAAGG AGGGTTTGGA ACTGTGCATA AGGGCTACGT AGATGATCAT CTCAGGCTTG GTTTGAAGGC
ACAACCTGTT GCTGTCAAGC TTCTTGACAT TGAAGGCTTG CAAGGACACC GTGAATGGCT GGCAGAAGTG ATTTTTCTTG
GGCAGCTAAG ACACCCCAAT TTGGTTAAGT TGATTGGGTA TTGTTGTGAA GATGAAGAAC GATTACTTGT CTATGAATTC
ATGCCACGAG GAAGTTTGGA GAATCACCTC TTCAGAAGGC TAACATCAAT TCCATGGGGG ACAAGATTAA AAATTGCAAT
AGGAGCTGCT AAAGGCCTTT CCTTCTTGCA TGGAGCTGAG AAGCCAGTCA TTTATAGAGA CTTCAAGACT TCCAATGTTT
TGCTTGATTC AGAGTTCACA GCAAAATTGT CAGATTTTGG ACTTGCTAAA ATGGGGCCAG AGGGATCCAA CACACATGTT
TCAACCAGAG TAATGGGCAC TTATGGATAT GCAGCACCAG AATACATCTC AACAGGGCAT TTAACAACCA AAAGTGATGT
CTACAGCTTT GGGGTAGTCC TGCTAGAACT GCTGACAGGA AGAAGAGCAA CGGACAAAAC AAGACCAAAG ACTGAGCAAA
ACCTTGTGGA TTGGTCAAAA CCTTACTTGA GTAGCAGTAG GAGGTTGAGG TACATTGTCG ATCCAAGGCT TGCAGGCCAA
TATTCTGTGA AGGGTGCAAA GGAAATTGCC CGTTTGGCAT TGCAATGCAT AAGTTTGAAT CCTAAAGACA GACCAAGAAT
GCCAATGATT GTTGAAACTC TTGAAGGCTT ACAACAGTAC AAGGACATGG CTGTTACCAG CGGACACTGG CCAGTGTCAC
AAAAATCTAC TAGGAATAAA GTCTCCAACA ATAAGACGAA TGCCAACACT AGAGCCGGTG CAAACCACAA GCAACCATCA
CCAGTTCTGA GCAAAAAAAC TTGATTGCTA CCTTTTAGAA GATTGCTTTT TAATGAAGTA TCATGTGGTG TAAGAGTAAT
TATCAAGCCA CCCTATATAT ATGTAATTAA ATGTATAAAA CATAAAT

[show][hide][copy]CDS

>Vigan.10G128500.01
ATGAAGGAAC CATCAAAGGC ATGGAGACCC TTCACTGCAA ATTGCTGCTC CACAGAGGAC CAAACCGTGT TCAAGAACTT
CAGCAGGTGC AAGCCTTCAC GTTCTGACTT GTCAAAGAAC ATTGCTCCTT TGCCATCGTT CAGGAGGCTC TCCTTCTCTG
ATCTCAGTCG TTCCTCGTCT GTGCGAATCA ATGAGGATCT TGCACAGTCT TTTGGGTCGG ATTTGTTTGA TTTTCAGCTG
AGTGAGCTGC GTGCCATAAC TCAGAATTTC AGCAGCAACT TCTTGCTGGG AGAAGGAGGG TTTGGAACTG TGCATAAGGG
CTACGTAGAT GATCATCTCA GGCTTGGTTT GAAGGCACAA CCTGTTGCTG TCAAGCTTCT TGACATTGAA GGCTTGCAAG
GACACCGTGA ATGGCTGGCA GAAGTGATTT TTCTTGGGCA GCTAAGACAC CCCAATTTGG TTAAGTTGAT TGGGTATTGT
TGTGAAGATG AAGAACGATT ACTTGTCTAT GAATTCATGC CACGAGGAAG TTTGGAGAAT CACCTCTTCA GAAGGCTAAC
ATCAATTCCA TGGGGGACAA GATTAAAAAT TGCAATAGGA GCTGCTAAAG GCCTTTCCTT CTTGCATGGA GCTGAGAAGC
CAGTCATTTA TAGAGACTTC AAGACTTCCA ATGTTTTGCT TGATTCAGAG TTCACAGCAA AATTGTCAGA TTTTGGACTT
GCTAAAATGG GGCCAGAGGG ATCCAACACA CATGTTTCAA CCAGAGTAAT GGGCACTTAT GGATATGCAG CACCAGAATA
CATCTCAACA GGGCATTTAA CAACCAAAAG TGATGTCTAC AGCTTTGGGG TAGTCCTGCT AGAACTGCTG ACAGGAAGAA
GAGCAACGGA CAAAACAAGA CCAAAGACTG AGCAAAACCT TGTGGATTGG TCAAAACCTT ACTTGAGTAG CAGTAGGAGG
TTGAGGTACA TTGTCGATCC AAGGCTTGCA GGCCAATATT CTGTGAAGGG TGCAAAGGAA ATTGCCCGTT TGGCATTGCA
ATGCATAAGT TTGAATCCTA AAGACAGACC AAGAATGCCA ATGATTGTTG AAACTCTTGA AGGCTTACAA CAGTACAAGG
ACATGGCTGT TACCAGCGGA CACTGGCCAG TGTCACAAAA ATCTACTAGG AATAAAGTCT CCAACAATAA GACGAATGCC
AACACTAGAG CCGGTGCAAA CCACAAGCAA CCATCACCAG TTCTGAGCAA AAAAACTTGA

[show][hide][copy]PROTEIN

>Vigan.10G128500.01
MKEPSKAWRP FTANCCSTED QTVFKNFSRC KPSRSDLSKN IAPLPSFRRL SFSDLSRSSS VRINEDLAQS FGSDLFDFQL
SELRAITQNF SSNFLLGEGG FGTVHKGYVD DHLRLGLKAQ PVAVKLLDIE GLQGHREWLA EVIFLGQLRH PNLVKLIGYC
CEDEERLLVY EFMPRGSLEN HLFRRLTSIP WGTRLKIAIG AAKGLSFLHG AEKPVIYRDF KTSNVLLDSE FTAKLSDFGL
AKMGPEGSNT HVSTRVMGTY GYAAPEYIST GHLTTKSDVY SFGVVLLELL TGRRATDKTR PKTEQNLVDW SKPYLSSSRR
LRYIVDPRLA GQYSVKGAKE IARLALQCIS LNPKDRPRMP MIVETLEGLQ QYKDMAVTSG HWPVSQKSTR NKVSNNKTNA
NTRAGANHKQ PSPVLSKKT*