GBrowse Details

Vigan.10G139800.01

Basic Information:
Name: Vigan.10G139800.01
Multiple alignment
Variant Information
Position: Chr10:19750422..19754261 (+ strand)
Length: 3840
Functional Information:
Description: Similar to thylakoid membrane protein ssl2009-like. [XP_004512285.1, Cicer arietinum]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.42,4.86,38.77,17.10,39.94,27.28,20.71,17.74
Arabidopsis thaliana homolog: AT1G42960.1
Automatic updates:
Name: NM_001255481 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100786309 (LOC100786309), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:19750422..19750561 (+ strand)
Length: 140
Type: five_prime_UTR
Position: Chr10:19750562..19750622 (+ strand)
Length: 61
Type: CDS
Position: Chr10:19751743..19751860 (+ strand)
Length: 118
Type: CDS
Position: Chr10:19752390..19752489 (+ strand)
Length: 100
Type: CDS
Position: Chr10:19752949..19753035 (+ strand)
Length: 87
Type: CDS
Position: Chr10:19753820..19753969 (+ strand)
Length: 150
Type: CDS
Position: Chr10:19753970..19754261 (+ strand)
Length: 292
Type: three_prime_UTR


>Vigan.10G139800.01
CTAGCGACAA TATCGAAGCG CAACACTAGA AGTAGTAGGA TCTGTTGTTG TCCCTATTGG TTTCTACGAC AAGCAAATCA
ACACTAACAG AGGAAAGGAG GGAAGAAAGA AAATCAGAGT TTTATTTTGG CTTTGCAGAA ATGGCTACTC TATCAAGCTT
CATCGCTTTG CCGAAGAATC CTAAGACCCA CTTTCTCTCA GGTTCCTCAT TGATGCCGAT GGACAAATGC TTCTTGAAAA
TCAGCTCTGG TGAACAATTT CCAGGCTCCT CTTTCAGAGC TAAAACATCA CGTAACCAAC CACTTGTTAT TCGAGCTGGT
GGTGATGGTG GAAGATCAAT AAGTGGAAGT ATTTTTGTTG GTGGTTTTGT ATTGGGAGGA CTAATTGTTG GAGCATTGGG
TTGTATTTAT GCACCTCAGA TAAGCATGGC AATAGCTGGA GCAGACCGTA AAGACTTGAT GAGGAAACTT CCAAAATTTG
TGTACGATGA AGATAAAGCT TTAGAGAAGA CTCGCAAGGT GCTGACTGAG AAAATAGCGC AGCTAAATTC TGCCATAGAT
GGTGTTTCTG CACAGTTGAG GTCAGACGTA AGCCCAAACG AAGACCCAGA TGAATTGGCA GTGAACTCAG AGGAAATGGA
AGCTTCAGTA CAATGAAATC ATTTGATGAT ATTTGAGCTC AAAATATCAT CATCTCTCCT TTTCTTAGTC AAGAAAATAT
GAACTTTGGT TATTGGTTTT AAGTTTTAGG AGTTAAATTT GGTTATCTCA TTTAACTATT TCATCTTATA ATGGTTCATT
GTTTACGTAC AGGATATATC TACTGGAAAC TTTTGTTTAT TGTGAGAGAA ATAAGAATTA TAAAGTATAA ACACATTGTG
GTTGTGAAGT TGATGATCAT AACTTGCTTT TTCATAATTG AATATATTAA TGTATGCAGT TGTCACAA

>Vigan.10G139800.01
ATGGCTACTC TATCAAGCTT CATCGCTTTG CCGAAGAATC CTAAGACCCA CTTTCTCTCA GGTTCCTCAT TGATGCCGAT
GGACAAATGC TTCTTGAAAA TCAGCTCTGG TGAACAATTT CCAGGCTCCT CTTTCAGAGC TAAAACATCA CGTAACCAAC
CACTTGTTAT TCGAGCTGGT GGTGATGGTG GAAGATCAAT AAGTGGAAGT ATTTTTGTTG GTGGTTTTGT ATTGGGAGGA
CTAATTGTTG GAGCATTGGG TTGTATTTAT GCACCTCAGA TAAGCATGGC AATAGCTGGA GCAGACCGTA AAGACTTGAT
GAGGAAACTT CCAAAATTTG TGTACGATGA AGATAAAGCT TTAGAGAAGA CTCGCAAGGT GCTGACTGAG AAAATAGCGC
AGCTAAATTC TGCCATAGAT GGTGTTTCTG CACAGTTGAG GTCAGACGTA AGCCCAAACG AAGACCCAGA TGAATTGGCA
GTGAACTCAG AGGAAATGGA AGCTTCAGTA CAATGA

>Vigan.10G139800.01
MATLSSFIAL PKNPKTHFLS GSSLMPMDKC FLKISSGEQF PGSSFRAKTS RNQPLVIRAG GDGGRSISGS IFVGGFVLGG
LIVGALGCIY APQISMAIAG ADRKDLMRKL PKFVYDEDKA LEKTRKVLTE KIAQLNSAID GVSAQLRSDV SPNEDPDELA
VNSEEMEASV Q*