GBrowse Details

Vigan.10G141800.01

Basic Information:
Name: Vigan.10G141800.01
Multiple alignment
Variant Information
Position: Chr10:19994784..20000583 (+ strand)
Length: 5800
Functional Information:
Description: Similar to Uncharacterized protein. [I1J8D1, Glycine max]
InterPro: RWP-RK domain (IPR003035)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.15,0.21,1.59,1.01,0.22,0.97,0.59,1.86
Arabidopsis thaliana homolog: AT4G35590.1
Structure :
Position: Chr10:19994784..19994952 (+ strand)
Length: 169
Type: five_prime_UTR
Position: Chr10:19994953..19995025 (+ strand)
Length: 73
Type: CDS
Position: Chr10:19995173..19995422 (+ strand)
Length: 250
Type: CDS
Position: Chr10:19997798..19998045 (+ strand)
Length: 248
Type: CDS
Position: Chr10:19998553..19998767 (+ strand)
Length: 215
Type: CDS
Position: Chr10:19999489..19999701 (+ strand)
Length: 213
Type: CDS
Position: Chr10:19999702..20000583 (+ strand)
Length: 882
Type: three_prime_UTR


>Vigan.10G141800.01
ATTTTAGCTG GGCATGATTC TAAACTGATC CGAAACCAAC GAAAAAAGCG GAAGATCATG CAACCTTGCA CTTAAAAAGC
TGGTTTTTGC ATCCTTCTAT CAGTCCACGC TTCATGCTTC TTCTTACCCA TTACTCATTT CACATTCTCA TGCCATCTTC
CATCTCTTCA TGGATTCCTC GCCGACCAAC AATACCACTT TGCTCACCAA CTTACTACTC TTCAATAACA CCGTCCAACC
AGAGTTGATG AGGAGCCTGC ATGTGTACCG GCAAGGGGAT GAAGAGGAAA GGGCAGTTGA GAGGGAGTTT TTGTTTTCAG
AGTGTGGATC CTATGTGGAA ATGCAGGCTA CCCCAATTCT TAAATTTGTG AAATCCCATG TTTCTCAAGT GTTCCAAGGG
TACAAGAATG GAGTGTGGCT TTGTATCTTT GCATTTCATG ATGATCACAC TCCTCGATTT TGCCGCATTC CTCCGCTTTT
GTTGGTCTCA AGAAACCCAA AGCTTCAGAT GGTTCCAAAC TTGCTCCATG ATCTCCACGT GATATACAAG TTGGACAGGA
AGGAGGAAGA CAAAGATACA ACTCTAGGAT CTACAGGGGA AGAATGTCAA GGGAACAGCA ACAATTTCCA ACCATCAGAA
AAAGTCTTTC CCGTTCTTGA TCAGGATCTC AATTATCTTC CTTACGAAGA AGATGAGTCT GAGTTACTAG ACAATGAGAC
AGATGTTGAA AGTTCACCAG GTTTGCTAGG GAAAAAAAAG AGGGCACCCA GTGACCTGGT AGCAAAAATT TCCTTATCAG
ATTTGGTCCA GTACTTTGGT ATGCCAATCG TAGAAGCATC AAGAAATCTA AATGTTGGGC TTACTGTTCT CAAGAGAAAG
TGCAGAGAAT TTGGTATTCC CCGCTGGCCT CATAGGAAGA TCAAGTCACT TGATAGTCTC ATTCATGATC TTCAGGAAGA
GGCAAAGAGC CAAGAATTGG AGGACATGGA AGCAGCAATG GCAGTGGCCA AGAGACAAAG GATGTTGGAG TGTGAAAAGG
AAAACATAGA GAAGAAGCCC TTCATGGACA TTCAAACCGA AACAAAGAGG TTCAGGCAAG ATGTTTTCAA GAGAAGACAC
AGAGCAAGAG CTGTTGGAAA ACATAATTCT ACAGTATCCA ACACATAGCA CAATGTAAAG AATGAAAGAG CAACATAAAC
CATAGTTCTC ACGTTGTAGA ATGAGATGAA AGTTGAAACC TCTACACCCC TTCTAACAGG GCATTTTGAC CCTCAGAAAT
TTACTTTTGA CTTATATATA GATTTCAATA TCCAAAGGAA GTGCTCAATT CCCTTTTGTC TTTTTTTCCC CTCTTAATCA
TTGCTTCTAC AGTTCTGATT GTATAATTAT AAGATTTATT ACTCTAACGT TGACCCGGAA AGCATTAAAA TTTGATGAAC
GTGGATCATA CTTAAGCAGT TTTGGAAAAC AGGCAACTAG GAGTTGTTTT GGGTTGAAAG CACTTTGTTT AGCCAATCTC
ATCGCTTCAG GTGTTAGGTG ATGTATAAAG CAAAACACTC ATGAAAGGTT CCATTTGATT GAGTTGGGTC TTATACATGA
ATGATGATAT TCTTAATTTC CACGAAGCTG TCATAGGTAC GTGCGCTTGC TTACATTGCA TTGCAGCAAA AACTGATAGC
CACTTTGATT GGTTAAATTC AAAGTTAAGG ATAATGCTAT GCGGGCGTGT CGTATTTGAT GTGTCTCTGT CCACTAACTT
GATTTGTTTT TTGTAGATGT TTATGCAGCA CTTTCCGCGA CGATGATTTG GATCTACGAA TAAACAAATA TAGTGAGACA
AAACACGTTA TTTGGAGTCC ATGTTTTGTT CCGCGGAAGA CCACATTCTA GTTAACTTCC TCCTTCGACG AAAAAAACCC
CAATGATGTT AACCTTTTGC GTTGTTCGCT CTCTCAAGTT GTTGTGCTGC TTGTAGTGTG TGCGGTGCAG CTGTTTTTTT
TTCTTTTTTC TTTTTAGAAT CAAGTAAAAT TTCCATATAT CAAACAAAAG 

>Vigan.10G141800.01
ATGGATTCCT CGCCGACCAA CAATACCACT TTGCTCACCA ACTTACTACT CTTCAATAAC ACCGTCCAAC CAGAGTTGAT
GAGGAGCCTG CATGTGTACC GGCAAGGGGA TGAAGAGGAA AGGGCAGTTG AGAGGGAGTT TTTGTTTTCA GAGTGTGGAT
CCTATGTGGA AATGCAGGCT ACCCCAATTC TTAAATTTGT GAAATCCCAT GTTTCTCAAG TGTTCCAAGG GTACAAGAAT
GGAGTGTGGC TTTGTATCTT TGCATTTCAT GATGATCACA CTCCTCGATT TTGCCGCATT CCTCCGCTTT TGTTGGTCTC
AAGAAACCCA AAGCTTCAGA TGGTTCCAAA CTTGCTCCAT GATCTCCACG TGATATACAA GTTGGACAGG AAGGAGGAAG
ACAAAGATAC AACTCTAGGA TCTACAGGGG AAGAATGTCA AGGGAACAGC AACAATTTCC AACCATCAGA AAAAGTCTTT
CCCGTTCTTG ATCAGGATCT CAATTATCTT CCTTACGAAG AAGATGAGTC TGAGTTACTA GACAATGAGA CAGATGTTGA
AAGTTCACCA GGTTTGCTAG GGAAAAAAAA GAGGGCACCC AGTGACCTGG TAGCAAAAAT TTCCTTATCA GATTTGGTCC
AGTACTTTGG TATGCCAATC GTAGAAGCAT CAAGAAATCT AAATGTTGGG CTTACTGTTC TCAAGAGAAA GTGCAGAGAA
TTTGGTATTC CCCGCTGGCC TCATAGGAAG ATCAAGTCAC TTGATAGTCT CATTCATGAT CTTCAGGAAG AGGCAAAGAG
CCAAGAATTG GAGGACATGG AAGCAGCAAT GGCAGTGGCC AAGAGACAAA GGATGTTGGA GTGTGAAAAG GAAAACATAG
AGAAGAAGCC CTTCATGGAC ATTCAAACCG AAACAAAGAG GTTCAGGCAA GATGTTTTCA AGAGAAGACA CAGAGCAAGA
GCTGTTGGAA AACATAATTC TACAGTATCC AACACATAG

>Vigan.10G141800.01
MDSSPTNNTT LLTNLLLFNN TVQPELMRSL HVYRQGDEEE RAVEREFLFS ECGSYVEMQA TPILKFVKSH VSQVFQGYKN
GVWLCIFAFH DDHTPRFCRI PPLLLVSRNP KLQMVPNLLH DLHVIYKLDR KEEDKDTTLG STGEECQGNS NNFQPSEKVF
PVLDQDLNYL PYEEDESELL DNETDVESSP GLLGKKKRAP SDLVAKISLS DLVQYFGMPI VEASRNLNVG LTVLKRKCRE
FGIPRWPHRK IKSLDSLIHD LQEEAKSQEL EDMEAAMAVA KRQRMLECEK ENIEKKPFMD IQTETKRFRQ DVFKRRHRAR
AVGKHNSTVS NT*