GBrowse Details

Vigan.10G146500.01

Basic Information:
Name: Vigan.10G146500.01
Multiple alignment
Variant Information
Position: Chr10:20555048..20558508 (+ strand)
Length: 3461
Functional Information:
Description: Similar to Uncharacterized protein. [I1J8F2, Glycine max]
InterPro: Amino acid transporter, transmembrane (IPR013057)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.96,0.01,4.21,14.50,28.10,1.53,64.40,0.77
Arabidopsis thaliana homolog: AT1G47670.1
Automatic updates:
Name: NM_001354291 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max amino acid transporter protein (LOC100819452), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:20555048..20555212 (+ strand)
Length: 165
Type: five_prime_UTR
Position: Chr10:20555213..20555646 (+ strand)
Length: 434
Type: CDS
Position: Chr10:20556149..20556285 (+ strand)
Length: 137
Type: CDS
Position: Chr10:20556404..20556831 (+ strand)
Length: 428
Type: CDS
Position: Chr10:20557463..20557594 (+ strand)
Length: 132
Type: CDS
Position: Chr10:20557707..20558195 (+ strand)
Length: 489
Type: CDS
Position: Chr10:20558196..20558508 (+ strand)
Length: 313
Type: three_prime_UTR


>Vigan.10G146500.01
TTATTATACG AACGGCCCCT CCTTTGTATT GTTCCACACC ACTATATATA TACATCCAAA TGTTTGAGAG AAAGTGCAGC
ACACAGAAGG TGGAGGAGAG AACACAACAT AGCACACATC AAGTGCAGAA CAAAAGCTAA AAACTAGGTT GCTTGGTCTG
TAAAAATGGC TGCTGAAGCT AAGGAAATAT GGTCTGCACC AATAACCCCT AGAACAGCTT CTGTGATGGG AACACCTGTT
GTGGCATCTC CACCTGTGTC ATGTCCACCC TCTCAGCTTC ATTCTCCATC TCTAACTAGG TCACCCCTTC TTCACTCAGA
GAATGGAGAT GCACCACGTC CTAAAACTAA GACTCCTAAG ACACCAAGAA CCCCAAGAAC CCCACTTAGG CTCTCCAACT
TAACTCCAAG GTTTATCACC CCTTTGGGTA GCCCTGTCAG AAAAGCTCTT AGGTTCACCA AGCTTGATCC TCAAGATGCT
TGGCTTCCAA TCACTGAGTC CAGAAATGGT AACAAGTACT ATGCTGCTTT TCATACCCTC TCTTCTGGTA TTGGAACTCA
GGCTCTTGTT CTCCCTGTTG CCTTAACTGT TCTTGGTTGG ACTTGGGGAA TCATAAGTTT GACTCTGGCT TTCATATGGC
AACTTTACAC CCTATGGCTT CTGGTCAATC TTCACGAGTC AGTGGAGCAA GGTGTACGCT ACTGTCGATA CCTTCAACTT
TGTGGTGCTA CCTTTGGGGA GAAAGTTGGG AAACTGCTAG CACTGTTTCC TATATTGTAC CTATCAGCTG GAACATGCAC
GACACTGATC ATCATAGGAG GATCCACAGC AAGAACATTT TATGAAGTGG TGTGTGGTGA TTCCTGCACT GCCAAACCCA
TGACCACTGT GGAATGGTAC TTGGTGTTTA CATGTGCAGC TGTGGTGCTG TCTCAGTTGC CAAACTTGAA TTCCATTGCT
GGGATATCAC TCATTGGAGC ACTCACTGCT GTAGGGTACT GTACCTCCAT TTGGATCACC TCTGTAGCAC AGGGTGCCCT
AGATGGTGTG AACTATGATC CTATAAAGGC TGGAAGCAGT GTTGAAACTG CCTTTAGTGT GCTTAATGCG TTAGGTATCG
TTGCCTATGC TTTCAGGGGC CACAATCTCA TCCTTGAAAT TCAGTCCACT ATGCCTTCAA GTGAGAAGCA CCCATCACAC
GTGCCAATGT GGAAAGGGGT GAAGGTTTCT TATGCAGTGA TTGCAGCATG CTTGTTTCCC ATGACCATTG GTGGCTATTG
GGCTTATGGT CAATTGATTC CATCAAACGG AGGAATGCTG ACAGCACTAT ACCAGTTCCA TTCCCATGAT GTGTCAAAAT
TTGTGCTGGG AATGACGAGT TTCTTTGTGG TGGTGAATGC TTTGTGTTCG TTTCAAATCT ATGGCATGCC AGCATTCGAT
GACATGGAGT CACAGTACAC TACAAGGATG AAGAAGCCAT GTCCATGGTG GCTGCGTGCA TTGATTCGTG TATTCTTTGG
GTTTATGTGC TTCTTCATTG GAGTGGCTGT TCCGTTTTTG TCTCAGTTGG CAGGGTTGAT TGGAGGAGTG GCATTGCCAG
TAACGTTCGC GTACCCTTGC TTTATGTGGC TCAAGACGAA GAAGCCAAAG AAGTACAGCG CGATGTGGGG TTTGAATTGG
TTCTTGGGGA CATTGGGGGT GTGTTTGAGT GTGGTGTTGG TTATATCTAG TTTGTATGTT ATCATTGATA CTGGCGTTAA
TGTCAGCTTT TTCAATCCTC AGTAGTGGAA AACATAAAGG GGAAAGAAAA CAAATACTAG GAAAATTATG TTGGGAGATA
ATTAGTAAGA GAATATTTGT GTTTTTCTTT TTTTTTTCTT TGTTTTCTCT TTTTTTTTTT ATAAATTCAA ATTTGTACCC
CACTTTTTGT AGTTATGGGC TCATTTGTCC TGGCAATGAT GATATTTGTA TAAATATCAT TAACTGCATA AGGGGAGGGG
AAGGTAAATC AAGGTTGTAT AAATTTCTTG TTTGGAAAAT GAAAAGTACT TGAAGAGGGC TTGAATTTTA TTTTTGTTTA
CTTTTAAAAA TTAATGTG

>Vigan.10G146500.01
ATGGCTGCTG AAGCTAAGGA AATATGGTCT GCACCAATAA CCCCTAGAAC AGCTTCTGTG ATGGGAACAC CTGTTGTGGC
ATCTCCACCT GTGTCATGTC CACCCTCTCA GCTTCATTCT CCATCTCTAA CTAGGTCACC CCTTCTTCAC TCAGAGAATG
GAGATGCACC ACGTCCTAAA ACTAAGACTC CTAAGACACC AAGAACCCCA AGAACCCCAC TTAGGCTCTC CAACTTAACT
CCAAGGTTTA TCACCCCTTT GGGTAGCCCT GTCAGAAAAG CTCTTAGGTT CACCAAGCTT GATCCTCAAG ATGCTTGGCT
TCCAATCACT GAGTCCAGAA ATGGTAACAA GTACTATGCT GCTTTTCATA CCCTCTCTTC TGGTATTGGA ACTCAGGCTC
TTGTTCTCCC TGTTGCCTTA ACTGTTCTTG GTTGGACTTG GGGAATCATA AGTTTGACTC TGGCTTTCAT ATGGCAACTT
TACACCCTAT GGCTTCTGGT CAATCTTCAC GAGTCAGTGG AGCAAGGTGT ACGCTACTGT CGATACCTTC AACTTTGTGG
TGCTACCTTT GGGGAGAAAG TTGGGAAACT GCTAGCACTG TTTCCTATAT TGTACCTATC AGCTGGAACA TGCACGACAC
TGATCATCAT AGGAGGATCC ACAGCAAGAA CATTTTATGA AGTGGTGTGT GGTGATTCCT GCACTGCCAA ACCCATGACC
ACTGTGGAAT GGTACTTGGT GTTTACATGT GCAGCTGTGG TGCTGTCTCA GTTGCCAAAC TTGAATTCCA TTGCTGGGAT
ATCACTCATT GGAGCACTCA CTGCTGTAGG GTACTGTACC TCCATTTGGA TCACCTCTGT AGCACAGGGT GCCCTAGATG
GTGTGAACTA TGATCCTATA AAGGCTGGAA GCAGTGTTGA AACTGCCTTT AGTGTGCTTA ATGCGTTAGG TATCGTTGCC
TATGCTTTCA GGGGCCACAA TCTCATCCTT GAAATTCAGT CCACTATGCC TTCAAGTGAG AAGCACCCAT CACACGTGCC
AATGTGGAAA GGGGTGAAGG TTTCTTATGC AGTGATTGCA GCATGCTTGT TTCCCATGAC CATTGGTGGC TATTGGGCTT
ATGGTCAATT GATTCCATCA AACGGAGGAA TGCTGACAGC ACTATACCAG TTCCATTCCC ATGATGTGTC AAAATTTGTG
CTGGGAATGA CGAGTTTCTT TGTGGTGGTG AATGCTTTGT GTTCGTTTCA AATCTATGGC ATGCCAGCAT TCGATGACAT
GGAGTCACAG TACACTACAA GGATGAAGAA GCCATGTCCA TGGTGGCTGC GTGCATTGAT TCGTGTATTC TTTGGGTTTA
TGTGCTTCTT CATTGGAGTG GCTGTTCCGT TTTTGTCTCA GTTGGCAGGG TTGATTGGAG GAGTGGCATT GCCAGTAACG
TTCGCGTACC CTTGCTTTAT GTGGCTCAAG ACGAAGAAGC CAAAGAAGTA CAGCGCGATG TGGGGTTTGA ATTGGTTCTT
GGGGACATTG GGGGTGTGTT TGAGTGTGGT GTTGGTTATA TCTAGTTTGT ATGTTATCAT TGATACTGGC GTTAATGTCA
GCTTTTTCAA TCCTCAGTAG 

>Vigan.10G146500.01
MAAEAKEIWS APITPRTASV MGTPVVASPP VSCPPSQLHS PSLTRSPLLH SENGDAPRPK TKTPKTPRTP RTPLRLSNLT
PRFITPLGSP VRKALRFTKL DPQDAWLPIT ESRNGNKYYA AFHTLSSGIG TQALVLPVAL TVLGWTWGII SLTLAFIWQL
YTLWLLVNLH ESVEQGVRYC RYLQLCGATF GEKVGKLLAL FPILYLSAGT CTTLIIIGGS TARTFYEVVC GDSCTAKPMT
TVEWYLVFTC AAVVLSQLPN LNSIAGISLI GALTAVGYCT SIWITSVAQG ALDGVNYDPI KAGSSVETAF SVLNALGIVA
YAFRGHNLIL EIQSTMPSSE KHPSHVPMWK GVKVSYAVIA ACLFPMTIGG YWAYGQLIPS NGGMLTALYQ FHSHDVSKFV
LGMTSFFVVV NALCSFQIYG MPAFDDMESQ YTTRMKKPCP WWLRALIRVF FGFMCFFIGV AVPFLSQLAG LIGGVALPVT
FAYPCFMWLK TKKPKKYSAM WGLNWFLGTL GVCLSVVLVI SSLYVIIDTG VNVSFFNPQ*