GBrowse Details

Vigan.10G148500.01

Basic Information:
Name: Vigan.10G148500.01
Multiple alignment
Variant Information
Position: Chr10:20740944..20743412 (+ strand)
Length: 2469
Functional Information:
Description: Similar to Uncharacterized protein. [I1J8H2, Glycine max]
GO: Molecular Function: protein binding (GO:0005515)
Molecular Function: zinc ion binding (GO:0008270)
InterPro: Zinc finger, RING-type (IPR001841)
Zinc finger, RING/FYVE/PHD-type (IPR013083)
YMGG-like Gly-zipper (IPR027367)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:11.19,5.20,20.99,13.54,14.39,13.03,19.20,11.85
Arabidopsis thaliana homolog: AT4G35840.1
Automatic updates:
Name: NM_001250749 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max RING finger protein (LOC100306109), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:20740944..20741508 (+ strand)
Length: 565
Type: five_prime_UTR
Position: Chr10:20741509..20741653 (+ strand)
Length: 145
Type: CDS
Position: Chr10:20742070..20742248 (+ strand)
Length: 179
Type: CDS
Position: Chr10:20742514..20742597 (+ strand)
Length: 84
Type: CDS
Position: Chr10:20742872..20743039 (+ strand)
Length: 168
Type: CDS
Position: Chr10:20743152..20743274 (+ strand)
Length: 123
Type: CDS
Position: Chr10:20743275..20743412 (+ strand)
Length: 138
Type: three_prime_UTR


>Vigan.10G148500.01
GAAAAATGTG AAAAATAAGC AGTGCGGTCG TACAAGTTGC AGAGAAAACC GTAGCCAATC AAAGCCTCCA ACTCCAAGTC
TAAGCTTCAA ACCGCGCTCT GACCCGAAAC ATAAACGAGT GATCGAAAAA TCAAAAAACC AAACTAAATT CTCGTGACTC
TTCGTGGTTG GTTTGCCACG CTCTTCTCTT TTATCACCGT CCCGTGTCAT CTGAAAGCGA TTTTGTTTCC TTTCTTTTAA
ATTAATTTAG ATTTAGCCCA AAAAAATTAG CCATAAAGAT ATAAAGAGAG GGAAAGGGTC GCGTTAAAGG CACCCAAGTT
TTAAATGCGA GTTGGTTGAT TGCAGCTTCT TTCAATCTTC TTTCATGCTT GTAGACTAAG CATTGCACAA GAGCGCGTCT
TTTATTCTTA TCGTCATTAT TGTTCATGTT GTAAATGTTA ACATATATAT TAATTTAACT TCTTAAACCC GAATCTGGTG
ACATCAGACC CTACCCTTTT GCTTATTTTT TCCTTTTCTG CCTTTCAATT TGCCTCCAAT CTCTTCAATT TTCTCACACA
CCCAGATGGA GTTTATGCCA AATCCCTGTC CTTTGCGTTC GTCTTCGCTC GGGAATCTCG TCGAGAGGGT TAAGCAGCTT
GGTACCCTCG CCGTCTCCGC CGTCATTGGG AACATCTTCT CTGCGATCTT GACCTTCTGC TTTGCATTAG TGGGCACTTT
GTTGGGGGCC TTGACTGGAG CTTTGATAGG ACAAGAAACT GAGAGTGGCT TCATTCGAGG GGCTGCTGTT GGAGCCATAT
CAGGAGCTGT ATTTTCCATT GAAGTGTTTG AATCGTCTCT TGTTCTTTGG CAATCTGACG AATCTGGAAT TGGCTGCGTG
TTATATTTGA TTGATGTTAT CGCCAGCTTA CTGAGTGGGA GACTTGTGCG TGAGAGGATA GGTCCAGCCA TGTTGAGTGC
TGTTCAAAAT CAGATGGGTG CTGTTGAAAC CAGCTTTGAT GAGGTTCAGA ACATCTTTGA CACCGGTGGT GCCAAAGGTT
TGTCTGGAGA TTTGGTTGAA AAAATTCCAA AAATAAAAAT TACAACTGAC AACAATATTG ATGCATCTGG TGATAGAGTT
TCTTGTTCAG TTTGCCTGCA GGACTTTCAG CTTGGAGAAA CAGTAAGAAG CTTACCTCAT TGCCATCACA TGTTTCACCT
TCCTTGCATA GATAAGTGGC TCTTTAGACA TGGTTCTTGC CCATTATGCA GAAGGGATCT GTAATTTTGT ATATCATAGC
ACAGACCGCT AAAAAAGTCC TTTTTTTTTG TTTTTGTTTA TACGCTCATT TCATTCTAGG ACTTACATCT AGTAGGAGCC
ATTGCAGTTT GAGTGGTTTC ATTGTACTAA ATTAGTGTAA AG

>Vigan.10G148500.01
ATGGAGTTTA TGCCAAATCC CTGTCCTTTG CGTTCGTCTT CGCTCGGGAA TCTCGTCGAG AGGGTTAAGC AGCTTGGTAC
CCTCGCCGTC TCCGCCGTCA TTGGGAACAT CTTCTCTGCG ATCTTGACCT TCTGCTTTGC ATTAGTGGGC ACTTTGTTGG
GGGCCTTGAC TGGAGCTTTG ATAGGACAAG AAACTGAGAG TGGCTTCATT CGAGGGGCTG CTGTTGGAGC CATATCAGGA
GCTGTATTTT CCATTGAAGT GTTTGAATCG TCTCTTGTTC TTTGGCAATC TGACGAATCT GGAATTGGCT GCGTGTTATA
TTTGATTGAT GTTATCGCCA GCTTACTGAG TGGGAGACTT GTGCGTGAGA GGATAGGTCC AGCCATGTTG AGTGCTGTTC
AAAATCAGAT GGGTGCTGTT GAAACCAGCT TTGATGAGGT TCAGAACATC TTTGACACCG GTGGTGCCAA AGGTTTGTCT
GGAGATTTGG TTGAAAAAAT TCCAAAAATA AAAATTACAA CTGACAACAA TATTGATGCA TCTGGTGATA GAGTTTCTTG
TTCAGTTTGC CTGCAGGACT TTCAGCTTGG AGAAACAGTA AGAAGCTTAC CTCATTGCCA TCACATGTTT CACCTTCCTT
GCATAGATAA GTGGCTCTTT AGACATGGTT CTTGCCCATT ATGCAGAAGG GATCTGTAA

>Vigan.10G148500.01
MEFMPNPCPL RSSSLGNLVE RVKQLGTLAV SAVIGNIFSA ILTFCFALVG TLLGALTGAL IGQETESGFI RGAAVGAISG
AVFSIEVFES SLVLWQSDES GIGCVLYLID VIASLLSGRL VRERIGPAML SAVQNQMGAV ETSFDEVQNI FDTGGAKGLS
GDLVEKIPKI KITTDNNIDA SGDRVSCSVC LQDFQLGETV RSLPHCHHMF HLPCIDKWLF RHGSCPLCRR DL*