GBrowse Details

Vigan.10G149200.01

Basic Information:
Name: Vigan.10G149200.01
Multiple alignment
Variant Information
Position: Chr10:20804135..20805498 (- strand)
Length: 1364
Functional Information:
Description: Similar to Uncharacterized protein. [I1LI42, Glycine max]
InterPro: Uncharacterised protein family UPF0434/Trm112 (IPR005651)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:3.18,4.29,8.21,9.67,11.74,11.14,5.20,10.72
Arabidopsis thaliana homolog: AT4G35905.1
Automatic updates:
Name: NM_001250993 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500428 (LOC100500428), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:20804135..20804711 (- strand)
Length: 577
Type: three_prime_UTR
Position: Chr10:20804712..20804840 (- strand)
Length: 129
Type: CDS
Position: Chr10:20805186..20805240 (- strand)
Length: 55
Type: CDS
Position: Chr10:20805318..20805406 (- strand)
Length: 89
Type: CDS
Position: Chr10:20805407..20805498 (- strand)
Length: 92
Type: five_prime_UTR


>Vigan.10G149200.01
ATTCATTAGA GGGCCATTTT GCAATTTATG AAAATTATTT GTAAGGGGTA CCTGGCAGTT TAGCGTGAAA GAGAGAGTGA
AGTTGAACAG AAATGGTGAA AGGAAGTAAA GAGATTCTGC AAAAAGCAGC CAAAACCCTA TCCGACATCC TCGTTTGCCC
TCTCTCTAAG CAACCTTTGA GGTATTGTGA GGAATCAAAT TCCCTGATCA GCGATGCTAT TGGCGTTGCC TTTCCCATAA
AAAATGGGGT ACCGTGCTTG GTTCCAAGAG ATGGGAAGAT ACTTGAGGAA GAAGATGCGT CAAAACATGA TAGTGATACC
AATTTATCAG CCGTGAATGA AGAGAGTCTT GGAAGAAGTG CCTGAGATTA AGTTGTAAGA TTTTTTTATG TTTGGATTTC
AATTCATTAG GGTTGGTTGC TGTTATTCTT TCTATGATGA TCAACTTTCT GTGACCCTGC TGACAGTGTA ACGTTGTGTG
AGAGATTTCA CTTGGAGGGA AGAATCGTGT TTTTCTTCTT TTCCTTGAAT GAAAAGAATT TGAACAATTT AATCTCACTT
TCCCCCTTCC CTTTTCGTTG TTTGTATTAA TAGCTGATTT GTATCTCCCA GAGTTCTCTA ACTGTATGAT TCGAGGTTTA
TTATTATACT CTTGTGAAAA TTAGTAGTGG TAAACAGAAG TTGTAATTTG TTTGGTTCAA TTACAAGTGT TGAGGATGCT
AACCTCTGTT AAAGTGATAT AAGGCTATGG AGATCTATAA TCAATAGCTT TACATAAAGA TGAACCTGGT CCATGGTGTA
GGAAATCGAG AGCACTTTCA ATTTTTTTTC TTTGGTGTCT TCTCCCTGTA TATTCTTTTA ACTTTTTGAC TTGTCTGCAT
TGTAAATATA TAGTACATTG TAATATAATC TTTCTGCAAT AACAAAATTA GAAACTTCTG TA

>Vigan.10G149200.01
ATGGTGAAAG GAAGTAAAGA GATTCTGCAA AAAGCAGCCA AAACCCTATC CGACATCCTC GTTTGCCCTC TCTCTAAGCA
ACCTTTGAGG TATTGTGAGG AATCAAATTC CCTGATCAGC GATGCTATTG GCGTTGCCTT TCCCATAAAA AATGGGGTAC
CGTGCTTGGT TCCAAGAGAT GGGAAGATAC TTGAGGAAGA AGATGCGTCA AAACATGATA GTGATACCAA TTTATCAGCC
GTGAATGAAG AGAGTCTTGG AAGAAGTGCC TGA

>Vigan.10G149200.01
MVKGSKEILQ KAAKTLSDIL VCPLSKQPLR YCEESNSLIS DAIGVAFPIK NGVPCLVPRD GKILEEEDAS KHDSDTNLSA
VNEESLGRSA *