VIGGS:GBrowse

Vigan.10G149400.01

Basic Information:

Name:	Vigan.10G149400.01 Multiple alignment Variant Information
Position:	Chr10:20810795..20813812 (- strand)
Length:	3018

Functional Information:

Description:	Similar to SKP1-like protein 1A-like. [XP_003517160.1, Glycine max]
GO:	Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511)
InterPro:	SKP1 component (IPR001232)
	BTB/POZ fold (IPR011333)
	SKP1 component, dimerisation (IPR016072)
	SKP1 component, POZ domain (IPR016073)
	E3 ubiquitin ligase, SCF complex, Skp subunit (IPR016897)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:1428.55,748.17,186.05,159.44,225.47,584.53,196.59,174.51
Arabidopsis thaliana homolog:	AT5G42190.1

Automatic updates:

Name:	NM_001249000 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max SKP1-like protein (LOC100527683), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr10:20810795..20811313 (- strand)
Length:	519
Type:	three_prime_UTR

Position:	Chr10:20811314..20811487 (- strand)
Length:	174
Type:	CDS

Position:	Chr10:20813288..20813581 (- strand)
Length:	294
Type:	CDS

Position:	Chr10:20813582..20813812 (- strand)
Length:	231
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.10G149400.01
AAAAAAATTA AGAGTCGTGT GTGTAACGTT TATTTTTTCT ATAGATCTTA CGGATAAATC AGACTATTCG TAACCAGAGA
GAGAGAGAGT TGGTATCCTT GCATTATAAA TAAAGCCCGA GTGAGTTATT TGCCTTTTCA TCTCAATCAG AGAAAAGTTA
GGGTTCGTGA CTTTCCCTTT TCCTTCGTTT CTTTCGTTCG GAATCATAAT CATCATCGTC GACATATCAT CATGTCATCG
GCGAGGAAGA TCACCCTGAA GAGTTCCGAC GGGGAGGCGT TCGAGGTGGA CGAGGCGGTG GCGCTGGAGT CGCAGACGAT
AAAGCACATG ATTGAGGACG ACTGCGCCGA CAGCGGCATC CCTCTCCCCA ACGTTACCAG CAAGATCCTC GCTAAAGTCA
TCGAGTACTG CAAAAAACAT GTCGATGCCG CCAATCCCGA CGACAAACCT TCTGAGGAAG ATCTCAAGGC CTGGGACGCG
GATTTCGTCA AGGTCGACCA GGCCACGCTC TTCGATCTCA TCCTGGCTGC GAACTACCTG AACATCAAGA GCCTGCTGGA
TCTTACATGC CAGACTGTAG CAGACATGAT CAAGGGGAAG ACTCCAGAGG AAATTCGCAA GACCTTTAAC ATTAAGAATG
ACTTCACCCC TGAGGAAGAA GAGGAAGTTC GTCGGGAAAA TCAATGGGCA TTTGAATGAT TTTGTTAAGC CATAAAATCT
GAATCAAAGA TCTGCCATGT GGTTTTATGC TATGCTTGTC TGTTTTTCAA AGATCTTCCT TGTAGATTTA CCTATGCTAT
ATACTTGTTT GTTTTCTATT TCAGACTATT TATGTTGACT GTGTTCACGA GTCAGAATTA TCATCCTACA TGAACGTTAA
TAGCGCTTGA ATTGTAATTA ATAGTTGTGA TGAGGGGAAG CGATTATTCT GACACGAGGG TTATTGAGTT CAATAATAGC
CATTCTTTGG CTCCTAAATT ATCATCACGT ATATTACATG GTAATAAGTG TAAGCACCTA AATGGTGCCA CAGTGCTAAG
ACCACTGTAT GCTTACTAAT ATGTAAAGGT TTGGGGATAC CATTTCATGA TTGTCCTTAC CAAACAGTTT CTTATACTGC
TATTCTTGAA TCCAAAAAGC AGCAAAGGAC ATTCAGAATA TCAAACACTC ACTCATGACC GAATTGTAGT TCTTGATCAC
TACTTTTAAA TACTAGAG

[show][hide][copy]CDS

>Vigan.10G149400.01
ATGTCATCGG CGAGGAAGAT CACCCTGAAG AGTTCCGACG GGGAGGCGTT CGAGGTGGAC GAGGCGGTGG CGCTGGAGTC
GCAGACGATA AAGCACATGA TTGAGGACGA CTGCGCCGAC AGCGGCATCC CTCTCCCCAA CGTTACCAGC AAGATCCTCG
CTAAAGTCAT CGAGTACTGC AAAAAACATG TCGATGCCGC CAATCCCGAC GACAAACCTT CTGAGGAAGA TCTCAAGGCC
TGGGACGCGG ATTTCGTCAA GGTCGACCAG GCCACGCTCT TCGATCTCAT CCTGGCTGCG AACTACCTGA ACATCAAGAG
CCTGCTGGAT CTTACATGCC AGACTGTAGC AGACATGATC AAGGGGAAGA CTCCAGAGGA AATTCGCAAG ACCTTTAACA
TTAAGAATGA CTTCACCCCT GAGGAAGAAG AGGAAGTTCG TCGGGAAAAT CAATGGGCAT TTGAATGA

[show][hide][copy]PROTEIN

>Vigan.10G149400.01
MSSARKITLK SSDGEAFEVD EAVALESQTI KHMIEDDCAD SGIPLPNVTS KILAKVIEYC KKHVDAANPD DKPSEEDLKA
WDADFVKVDQ ATLFDLILAA NYLNIKSLLD LTCQTVADMI KGKTPEEIRK TFNIKNDFTP EEEEEVRREN QWAFE*