GBrowse Details

Vigan.10G157100.01

Basic Information:
Name: Vigan.10G157100.01
Multiple alignment
Variant Information
Position: Chr10:21542333..21547209 (- strand)
Length: 4877
Functional Information:
Description: Similar to Uncharacterized protein. [V7CKY4, Phaseolus vulgaris]
GO: Molecular Function: acid-amino acid ligase activity (GO:0016881)
InterPro: Ubiquitin-conjugating enzyme, E2 (IPR000608)
Ubiquitin-conjugating enzyme/RWD-like (IPR016135)
Ubiquitin-conjugating enzyme, active site (IPR023313)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:190.76,93.23,54.35,63.39,77.26,55.32,89.98,44.86
Arabidopsis thaliana homolog: AT1G75440.1
Automatic updates:
Name: NM_001250347 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305572 (LOC100305572), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:21542333..21542960 (- strand)
Length: 628
Type: three_prime_UTR
Position: Chr10:21542961..21543056 (- strand)
Length: 96
Type: CDS
Position: Chr10:21543290..21543378 (- strand)
Length: 89
Type: CDS
Position: Chr10:21546509..21546572 (- strand)
Length: 64
Type: CDS
Position: Chr10:21546671..21546773 (- strand)
Length: 103
Type: CDS
Position: Chr10:21546922..21547025 (- strand)
Length: 104
Type: CDS
Position: Chr10:21547117..21547146 (- strand)
Length: 30
Type: CDS
Position: Chr10:21547147..21547209 (- strand)
Length: 63
Type: five_prime_UTR


>Vigan.10G157100.01
GAATCTCTTC TTCTTTGTTC ATTGAGAATT GTTCCTGTAC CCATTCGTGT ACGCGGAAGA ATCATGACTA GTTCTTCTGG
TGCCGCTCGC AAGAATCTCA GTAAGATTGC CTGCAATAGG CTCCAGAAAG AGCTCGTGGA GTGGCAGGTC AATCCCCCAA
CTGGTTTCAA GCACAAAGTC ACCGATAATC TCCAGAGGTG GGTTGTTGAA GTCACTGGAG CTCCCGGGAC ACTTTACGCC
AATGAGACCT ACCAGCTTCA GGTCGATTTT CCCGAGAATT ACCCTATGGA AGCTCCCCAG GTCATATTCT TGCATCCGGC
TCCGCTGCAT CCCCATATCT ACAGCAACGG CCATATTTGT TTAGATATAT TGTATGATTC CTGGTCCCCT GCCATGACAG
TTAGTTCTAT CTGCATCAGT ATTCTCTCAA TGCTTTCTAG CTCGACCACA AAGCAACGCC CTGAAGATAA TGATCGCTAT
GTAAAGAACT GCAGAAATGG CAGATCGCCT AAGGAGACTA GGTGGTGGTT CCATGATGAC AAAGTATAAA AAAAAGTTTC
TCTATTAAGT CCACAAAAGG TAGAGAGTAG AGGATTATCC TTTTGAAATC AAAATGAAAT GGGAAAATGC ATTTTGAGAA
ACCAGGATCC CTTTAAATTA ATTGGATAAT AACTCTGCTG TAAATTGTCA TTGCCTGGTA TTTGTAAAGG AAGGGGAAAC
TGTGTCTTAA GCAACTTAAG GAGCAAACGA ACTCAAAACA TCGTGGTTAA TCCCTGACTG AGGTCTTTGG ATGTGGATAT
AGATGGTCTG GTTAACCCCC GTATTGCTGA CTTGTGTTTA ATAATTCTCT TAAGAATTGT CCACTATAAC TCATAATTGA
CTATATGCAT TTCCGACTTT CAGTAATGAT ATAGAAAACA ACTCCTCATA CATCTTTGGT CGTAAGTACG GGGTGCTCTA
ATCTTTCCTT GTACTCAGCT CTTAAACTTG TCGATGCATC AATTTGTTAG GAACACTAGA AAAATGCGAC TTTACTTTTT
GTTCTTCCTT TTATATCACC TAGTTCTTGT TACTCATTTT CTTGGGTAGA AAAGCTTCGA GAAGGGAACG ATTAAATCTT
TCTAGTCCAA AGGGGACGGT AAGACAAAAT TGTTTTTCAA TATGAATTGC ACTTGAA

>Vigan.10G157100.01
ATGACTAGTT CTTCTGGTGC CGCTCGCAAG AATCTCAGTA AGATTGCCTG CAATAGGCTC CAGAAAGAGC TCGTGGAGTG
GCAGGTCAAT CCCCCAACTG GTTTCAAGCA CAAAGTCACC GATAATCTCC AGAGGTGGGT TGTTGAAGTC ACTGGAGCTC
CCGGGACACT TTACGCCAAT GAGACCTACC AGCTTCAGGT CGATTTTCCC GAGAATTACC CTATGGAAGC TCCCCAGGTC
ATATTCTTGC ATCCGGCTCC GCTGCATCCC CATATCTACA GCAACGGCCA TATTTGTTTA GATATATTGT ATGATTCCTG
GTCCCCTGCC ATGACAGTTA GTTCTATCTG CATCAGTATT CTCTCAATGC TTTCTAGCTC GACCACAAAG CAACGCCCTG
AAGATAATGA TCGCTATGTA AAGAACTGCA GAAATGGCAG ATCGCCTAAG GAGACTAGGT GGTGGTTCCA TGATGACAAA
GTATAA

>Vigan.10G157100.01
MTSSSGAARK NLSKIACNRL QKELVEWQVN PPTGFKHKVT DNLQRWVVEV TGAPGTLYAN ETYQLQVDFP ENYPMEAPQV
IFLHPAPLHP HIYSNGHICL DILYDSWSPA MTVSSICISI LSMLSSSTTK QRPEDNDRYV KNCRNGRSPK ETRWWFHDDK
V*